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"planemo upload commit 699e21438d7d173e81e8d60b5717dc1485785c7d"
author diodupima
date Thu, 08 Jul 2021 18:13:38 +0000
parents 88fe28c4976d
children 846be85dc0d0
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<tool id="coast_search_blast" name="COAST - Search with BLAST" version="0.1.2">
    <description>Run a new job, and identify the closest proteomes, using BLAST</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package" version="2.10">blast</requirement>
        <expand macro="requirements"/>
    </requirements>
    <command ><![CDATA[
        coast
        @QUERY@
        @DB@
        --engine blast
        --inplace_workspace
        @AAI_FILTER@
        @OUTPUT@
        @QUERY_KEYWORDS@
        @OUTPUT_FORMAT@
        @BLAST_TAX_FILTER@
        @BLAST_ALN_OPTIONS@
        @GENERIC_ALN_OPTIONS@
    ]]></command>
    <inputs>
        <expand macro="input_query" />
        <expand macro="protein_db" />
        <expand macro="blast_taxon_filter"/>
        <expand macro="output_format"/>
        <expand macro="aai_filter"/>
        <section name="aln_adv" title="Advanced Alignment Settings" >
            <expand macro="blast_aln_options"/>
            <expand macro="generic_aln_options"/>
        </section>
    </inputs>
    <outputs>
        <expand macro="results_alignment"/>
        <expand macro="results_report"/>
    </outputs>
    <tests>
    </tests>
    <help><![CDATA[
    COAST BLASTp
        Alignment search tool that identifies similar proteomes using the BLASTp alignment engine.
    ]]></help>
    <expand macro="citations"/>
</tool>