# HG changeset patch # User dfornika # Date 1583853639 0 # Node ID 1710fc590220b57c2ad2ab0f1dd3529f91480635 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/readucks commit 5803dd6efc58e812f3181261b290039bfe011602-dirty" diff -r 000000000000 -r 1710fc590220 readucks.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readucks.xml Tue Mar 10 15:20:39 2020 +0000 @@ -0,0 +1,42 @@ + + Nanopore read de-multiplexer + + 0.0.2 + + + readucks + + + + + + + + + + + + + + + + + + + + + + + + + diff -r 000000000000 -r 1710fc590220 test-data/demuxed/NB02.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/demuxed/NB02.fastq Tue Mar 10 15:20:39 2020 +0000 @@ -0,0 +1,4 @@ +@d9114f77-d10d-c67c-290c-7e146ef8f25e junk_seq length=398 error-free_length=401 read_identity=87.24% start_time=2020-01-22T12:00:00Z +TCGTTCAGTTACGTATCGCTAATCGAACGAACGAACGAACGAACGAACGAACGGTGAACAACGAGCGAACAGACGAACAAGCGACGAACGAACGAGCGAACGAACGAACGAACGAAAGAGACGAAGGAACGAACAGAACGAACGAGCGAGCGGCGAACGACGAGCAACAGACAGAACAACGAACGAACGAGCAGGCGAACGAACGAACAAGACGAACGGAGCGACGAACAAACTGAACGAACGAACGAACGAACAAACGAACGAACGAACGAACGAACGAACGAACGAACGAACAGGACGAACGGAGCGAACGAACGAACGAACGTAACGAACGAACGAACGAACAACGAACGCACGAACAAAACGAACAACGAACGACGAACGAACGGAACGAACGA ++ +7;/30+'(100<)-6+)*(/-7.-(2-&:'2+-/%2-5*/8-(350/1/4&*'&'%$-6;;)9,,7%+)+%*(%/&($((')(&)+1:171*562'*5;21)8.;47.6-+'00.3+-(),+3-,%&,6-1;/*)$:,3-/..8-,,*'$(,(,').346('*'-'&),('%+&-,3,0+558/030-.-'''$&&'+-;9/7,48+3%$**0)*,8,&8$(-+&$9(:0103(.+71/*01,0,78.+/-/+(+/-.+:+68)340273+-2(115--1)46,+382*113&3*,$,8-43(,%'*,.,-4-(-+543/276,1)&%*7&.08/9-.)*4<%4*')04+.&)%2047;4$0-+7+-(0-03,5-,$6&,&.65'+;8-.-)#,51;1 diff -r 000000000000 -r 1710fc590220 test-data/demuxed/NB10.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/demuxed/NB10.fastq Tue Mar 10 15:20:39 2020 +0000 @@ -0,0 +1,4 @@ +@f7d698d4-7bea-9ec8-613b-f64455c21e6e ncov_amplicon_90,-strand,109-491 length=289 error-free_length=317 read_identity=78.82% start_time=2020-01-22T12:00:00Z +TTCAAGTTACGTATTGTGAGTGTGAAGCAAAGTGTTATAACGCTTACCGCAGCAATGGAAAAGTGGCAGAGTAAAGTTGTGAACTTCCTCTTGTCTGATGAACAGCTTTGATTGAAACTTGATCGGCGCGTAGCTGATAGACACTTTACACCGACGGACAAGCAAAAGCAATGGAGTTAAAACAAGATCCAGTGCAAAATTTTATCCAGCTAGCGGATGATGGTGAAGCCCCATTATGTAAAGCAAATTTCTTTTTAAATTACTGTTGTACGCTAACACTCGGCAGTGA ++ +-4&,'<+%'2/8'1,.$&(1,/8/0/--(.+8-6+.6230&*&$)#).+-+(2&%(&(.'1/%*))'*)'+4*)71(&#,'75/3425/4-9%5.<65/609'(2,(')0()()/(7+53+(%90'8'5&49--/3+4+,-*'%('.((,,,'&+*0+05-1,625003-,&)#%-1/0))+.1--$'((4,,326-.'3%3&49&.++%(,0(*&)''&312%29-)+(2.''''$)'#)-)5''&%%&-,.'+-+)*%7$+,(-00'$()&+-/6/*(,*%&,,.$/ diff -r 000000000000 -r 1710fc590220 test-data/demuxed/NB15.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/demuxed/NB15.fastq Tue Mar 10 15:20:39 2020 +0000 @@ -0,0 +1,4 @@ +@46e06df1-edc1-329d-9a76-bd4c1fe30f6c ncov_amplicon_9,+strand,137-516 length=265 error-free_length=272 read_identity=88.44% start_time=2020-01-22T12:00:00Z +TTACTTCGTTCCAGTTACGTATTGCTGGAGTATGGCTACATGCTACTTATTTGATGGCCTGGTGATGTTTTAATTGGCTTCACATATGTATTGTTCTTTACCCTAGGTGAGGGATGAAAGAAAAGGTTATGTGAATAAGAGTTTGGGCCATCAACTCAATATGAGGTATGGTACCTGAAGAGGATTACGAGGTAACCTTTGGAATTTGGTGCCACTTCTGCTGCTCTCAACCTGAAGAAGGAGCAAAGCAGATTGGTTAAGATGA ++ +/..43)1.+-5(&6:34614.021471..3-&7,4,)',7%(222)2,,.*;1-&%6'+*6+.,&,5.0+'')125.623-67(*2'.507--+)32*4'-1/6%'&,/,;-,)+2<423)*5))-+%.,+0*.1+0+0%&')-)((2++33035,.786827197;'./5*5:)7.-015(4:*)%3%2()'&.3(-5+-2-28273+68*/6)/72./.%/32(*'*191,3-/8212-++/4''%$&+4/251=<3('*13, diff -r 000000000000 -r 1710fc590220 test-data/demuxed/unassigned.fastq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/demuxed/unassigned.fastq Tue Mar 10 15:20:39 2020 +0000 @@ -0,0 +1,388 @@ +@abd3ff86-b743-509c-15a6-d3590b0763be ncov_amplicon_78,-strand,0-380 length=364 error-free_length=380 read_identity=88.56% start_time=2020-01-22T12:00:00Z start_time=2020-01-22T12:00:00Z +CATTTCATCTGTGGGCAAAGTGGCAAAACGGTAAGGCCGTTAAACTTTTGTGCCAAATGGTCTCTAGCAGCAATATCACCAAGAGTCAGTCACCATATTGTTTGATGAAGCCAGCATCCTCTGCAAGTGTCACTTTGTTGAAAAGTAGATCTTCGAGTAAATGACCTCTTGCTTGGTTTTGATGGATCTGGTAATATTTATGAAAATTAAAACCAAAATCTTTGGTGGTGGTGTTTTGTAAATTTGTTTGCCTTGTGCATAACTTCTTTGGGTGTTTGTCTTGTTCAACAGCTACTCAGTTAAAGCGCAGTTAATTATTGTACAAAAACTGCGCAACAAGATTGTGCGTCAGTTGAATCACCAC ++ +7/,(0+4;7-1,0'(1-4-*-<2+64&+2(+%/20,4571;971+<8.-+2(3+837-,%1*(222(0-.-*3/(40-(63))64+),&/0556,//:+&9*9,*3,*;(3/0(60&-'($'+)&0.(+-0.+/84(5('4.-8'/8(;444-;',0-2..,'6./93897(/*2911*2*011+1,//12.38,(,/7&0(+;,)0)./80+.)+(&631,*$%-&8123,3:6-7)-31:9;(4/,14*,+'2&)-0'6,)):+231'*8)6-,61'19.).;831<1+521%++-3613.<,9%,,-''&&+*00)&/2*5:-6-+''&*((,3)(+)).3++-'*$5+1;/5,+-//;55 +@cbd573b5-8194-a02a-e20b-d11ab7ca2fb4 ncov_amplicon_48,-strand,0-381 length=381 error-free_length=400 read_identity=85.71% start_time=2020-01-22T12:00:00Z +CGATTCAGTTGCATATTGCGCTGACGATGACTTGGGTTTAATTAATACAGCCACCATCGCTACAATCAAAGTGCTTATCAACAACCTTCAACACAAAATGGTAGTTGTCTTGATATCACATTGTTGGAATTATAACGATAGTAGTCATAATCGCTGATAGCAGCATTACCATCTGGGCAAAGAGAAATGTTTCCATTCGATCTTCCTCATAAAAACCCTTAGACACACAAAGTCAAAAGTCTGTCAAAATTACCGGTTTGACAGTTTGAAATAGCATTGTTATTAAGTGCAGCTACTGAAAAGCGACGTGGCGTGTATCTAGTAATAATTACCGAAGCAGCGTGCATAGCAGAGGTCGGCGGCATACACCAAGTAATTCTT ++ ++*%,<+1)(/'''&,7$.-+#)',*555(%61))-&$%#('*,$)*.6;0:+8961,,;.(%+).%2..+6%.1***+-65+4--,9')&9+(--(6%+'-345<1,:5')&(,7+(*5/3(1+)*.&(385552.-*4+5).%,;4,2%316621:7/,4(985+,,.'.2/5*&,/,)3)%&(+*4,04.4(,'7%#1%*4577&.)#.-&.')-*)0/%6);)5'/+(/6*0&#(+0/'*'(60/)8%:5,.+3(+-,//.671+)39+'*&)''8&83(/-1-36322.804/6)1/$)+)5'/'0++13%+)*38*,52+2*%)<**/+82*)0-+3-60-0-054801'',.&8'+2(.04(8+:('75*&3$&$ +@3ab88a70-f0be-5cba-33c2-5af90cf6699a ncov_amplicon_93,+strand,1-383 length=351 error-free_length=396 read_identity=73.35% start_time=2020-01-22T12:00:00Z +GCCAAAAGCGTGTTGATGCTGCGATTGGGTTCAACCTCACTCAGCGCGGCAAATAGACCTTAAATTCCTGAGGCAAAGGCGTTCGAATTAACAATAAGTCCCAGATGAACAAGTGTGGTACCGAGCAACCGGGCGAATTCGGTGGTTACGGTAAAGGGATCTCCGGTCAAGATGGTATTTCTACCCTGAACTGGGCCAAGAGCTGGACTTATCGTGAGCAAAGACGGCATCCTTATGGGTTGCAGCTGGGCCGTGGATAACACACCAAGGATCTTGGCACCAAATCTGCTAACAATGCTACAATCCGTGCACGAAATTCTAGGAACAGCTTGTGCCCGCTGCCACATAGCG ++ +'+.%%(*'()(-$$$''*2+7*5$%,'54%('.$*)(,++'*.,&#&*()/:.*,)+;%8-63-1/5+%&/.%)$$+&/12364'8&,3'/6%&',(9'40%*7*39%')+'%2',%)'+$'()&$'*+%#&-7*3.0%'%((&8)/-(3:50)((&)6%./24)*%1%),),93-.7:/+,:)%.''*99,1-,/7+$,%..+/31&%&'%(+%)')+/*&7'-3.8')0%%*4/0))642;3*%*-+%'-&&''*1&(+((&(316$'4,&%',*4.*+*4'%),5(.)92,4/.0+&40'+4)$*/('%&$%'-%/'(*3.6*))&-+$%--0%1&/+&$(+,(2'00 +@069e20a5-1fc0-99e2-dc1b-bc96c3dbc49c ncov_amplicon_65,-strand,105-489 length=297 error-free_length=308 read_identity=87.92% start_time=2020-01-22T12:00:00Z +CGTTTGAACGCTGTTGTTTACGGCCTCATGAATGTGACTCATAAAGACTAGCTTGTTTTGGGACCTACAGATGGTTGTAAGCCTTTAACATACCTTCTGAATAAGAACAACCATTAAGGGCGTTTCTAAGTAAGTCTACTTACGACCATAAACTCTACCATCAAAAAGACGGTGAGTGGTGCACAAATCGTTTCGTTAGTTTCTTGGCTATGCAGTCATAGAAAAACACCAATAGTAGATATATGTGCTGAGCATCTCTTTAGTTCCCAGATCACAGTATTTAGCAGCCAATGTCCC ++ +,'$/*+&.+&/)'//&$.0(8,(,+')+&%/;)2(493)43)#80/55/459/**0-,*.'/-7*0-+.,-/568,6561%-%,;+94-0-)8)%*6;-+;,-4*,0*.-(**+;4-%)02*-)-5&%.&-(536(4,)',()+'.,352,7*-(0'7975*)#**41',%.(225/33+814511*+84529(0&1%3-+/(..82.1451(&01644.-8((9/*7823,-'95)23;5)(9*0:.*(+5/,5+/4)+*')*)+7+4+24&1-3(11<93(),..-*0&&,-9%+ +@ca97872f-30c9-95f0-ee88-ab327e2032f2 ncov_amplicon_28,+strand,165-541 length=243 error-free_length=249 read_identity=85.29% start_time=2020-01-22T12:00:00Z +TTGTACTCGTTCAGTTACGCTAAGTGCAATTTTGACACATGGTTTGGCAGCGTGGTGGTAGTTATACTGACAAGCTTACCCATTGGTTGCGAAGTCATAAAAAGGAAGTGAGTTTAAGCGTGCTGTGGTTTTGCCTGGCGATATTTTGCACAACATAATGGTGACTTTTTGCATTTCTCTACCTAGAGGTTTTTGGTGCAGTTGGTACATCTGTTACACACCATCAAAGCTTATAGAGTACAC ++ +:72)//-562+0:+-0/*0'+.#++%'$(&*-/20/,-6&42/,($.9**;035-086%,.0*1-,*$,4*8*2/.3%'+8744/%.81,,*''*59.(*1&39%/7,7(%24,+($.''**-*$,(4/,9$<2,.-8,/77-)%*'%,8815*0+43+.4/9+5$95598.--'*,5)0)$2.):(0./,,5,&-,)2;.0'09&+'&59;-/0161;&,721+/,/'*,+-;,6