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diff ivar_variants_to_vcf.xml @ 0:c87f6ad32fd8 draft default tip

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"planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/ivar_variants_to_vcf commit 16332019b4aab6af58c74e631f390dfeef23a3dc"
author dfornika
date Fri, 05 Jun 2020 05:10:05 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ivar_variants_to_vcf.xml	Fri Jun 05 05:10:05 2020 +0000
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+<tool id="ivar_variants_to_vcf" name="iVar Variants to VCF" version="0.1.0">
+    <description>Convert iVar tabular variant output to .vcf format</description>
+    <requirements />
+    <command detect_errors="exit_code"><![CDATA[
+        '$__tool_directory__/ivar_variants_to_vcf.py'
+        -ma '${min_allele_freq}'
+        ${input}
+        ${output}
+    ]]></command>
+    <inputs>
+        <param name="input" type="data" format="tabular" />
+        <param name="min_allele_freq" type="float" min="0.0" value="0.0" max="1.0" />
+    </inputs>
+    <outputs>
+        <data name="output" label="Variants (VCF)" format="vcf" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="SAMEA6808195-variants.tsv" />
+            <param name="min_allele_freq" value="0.5" />
+            <output name="output" file="SAMEA6808195-variants.vcf" lines_diff="2"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+    ]]></help>
+    <citations>
+        <citation type="doi">10.5281/zenodo.3872730</citation>
+    </citations>
+</tool>