Mercurial > repos > dfornika > data_manager_mash_sketch_builder
view data_manager/mash_sketch_builder.xml @ 1:af86557c1b87 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit 20558d9de7b6dd375a8835698f231cbc0c83446d-dirty"
author | dfornika |
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date | Sat, 22 Feb 2020 01:01:25 +0000 |
parents | 647eedfd1556 |
children | d892b30d5492 |
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<?xml version="1.0"?> <tool id="mash_sketch_builder" name="Mash Sketch" tool_type="manage_data" version="2.1+galaxy0" profile="18.09"> <description>builder</description> <requirements> <requirement type="package" version="2.1">mash</requirement> <requirement type="package" version="3.7">python</requirement> </requirements> <version_command>mash --version</version_command> <command detect_errors="exit_code"> <![CDATA[ python '$__tool_directory__/mash_sketch_builder.py' '${out_file}' --fasta '${all_fasta_source.fields.path}' --sketch-size '${sketch_size}' --kmer-size '${kmer_size}' ]]> </command> <inputs> <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> <options from_data_table="all_fasta"/> </param> <param type="integer" name="sketch_size" value="1000" min="10" max="1000000" label="Sketch size" /> <param type="integer" name="kmer_size" value="21" min="1" max="32" label="kmer size" /> </inputs> <outputs> <data name="out_file" format="data_manager_json" /> </outputs> <tests> <test> <param name="assembly" value="test_assembly.fasta"/> <param name="sketch_name" value="Test Sketch" /> <output name="out_file" value="mash_sketch_data_manager.json" /> </test> </tests> <help> </help> <citations> <citation type="doi">10.1186/s13059-016-0997-x</citation> </citations> </tool>