# HG changeset patch # User dfornika # Date 1561403419 14400 # Node ID 6883b8116d0d5c8bd0d6cae685206c5dedce4e0d # Parent bf35d745b4932da76bab2d16a4b862f72797c091 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mob_suite_database/ commit ded3b42d8a746eac2973cc17826160e43ac11186-dirty diff -r bf35d745b493 -r 6883b8116d0d data_manager/mob_suite_build_database.py --- a/data_manager/mob_suite_build_database.py Mon Jun 24 14:38:54 2019 -0400 +++ b/data_manager/mob_suite_build_database.py Mon Jun 24 15:10:19 2019 -0400 @@ -45,7 +45,7 @@ os.rename( os.path.join(target_directory, database_path, 'references_updated.fasta'), - os.path.join(target_directory, database_path, 'ncbi_plasmid_full_seqs.fas') + os.path.join(target_directory, database_path, 'plasmids.fas') ) print("Sleeping for 20s") @@ -53,14 +53,14 @@ print("Sleep ending") makeblastdb_args_list = [ - '-in', os.path.join(database_path, 'ncbi_plasmid_full_seqs.fas'), + '-in', os.path.join(database_path, 'plasmids.fas'), '-dbtype', 'nucl', ] subprocess.check_call(['makeblastdb'] + makeblastdb_args_list, cwd=target_directory) mash_sketch_args_list = [ - '-i', os.path.join(database_path, 'ncbi_plasmid_full_seqs.fas'), + '-i', os.path.join(database_path, 'plasmids.fas'), ] subprocess.check_call(['mash', 'sketch'] + mash_sketch_args_list, cwd=target_directory)