# HG changeset patch
# User dfornika
# Date 1564086749 14400
# Node ID 6df5ab590a1babc571ffb81fd9d25575da8fa666
# Parent  cc4b843d37f1a9a8c75bc9ed908935b38715c713
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mash_sketch/ commit 423cf96266f6ac433052ff72edb1397502313010-dirty

diff -r cc4b843d37f1 -r 6df5ab590a1b data_manager/mash_build_sketch.py
--- a/data_manager/mash_build_sketch.py	Thu Jul 25 15:19:22 2019 -0400
+++ b/data_manager/mash_build_sketch.py	Thu Jul 25 16:32:29 2019 -0400
@@ -7,6 +7,7 @@
 import errno
 import json
 import os
+import shutil
 import string
 import subprocess
 import sys
@@ -33,12 +34,14 @@
             pass
         else:
             raise
-    
+
+    shutil.copyfile(mash_args['input'], os.path.join(target_directory, database_path, 'seqs.fasta'))
+          
     mash_sketch_args_list = [
         '-p', mash_args['threads'],
         '-k', mash_args['kmer_size'],
         '-s', mash_args['sketch_size'],
-        '-i', mash_args['input'],
+        '-i', 'seqs.fasta',
         '-o', 'sketch',
     ]