# HG changeset patch
# User dfornika
# Date 1564077545 14400
# Node ID f4bc3b60a16d964eab5efd73d5f3488cf8f757dd
# Parent  bb52c7f2c2a2fc2980b8db2f6b578d6c47423bb5
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mash_sketch/ commit 423cf96266f6ac433052ff72edb1397502313010-dirty

diff -r bb52c7f2c2a2 -r f4bc3b60a16d data_manager/mash_build_sketch.py
--- a/data_manager/mash_build_sketch.py	Thu Jul 25 13:55:23 2019 -0400
+++ b/data_manager/mash_build_sketch.py	Thu Jul 25 13:59:05 2019 -0400
@@ -30,7 +30,7 @@
         '-p', mash_args['threads'],
         '-k', mash_args['kmer_size'],
         '-s', mash_args['sketch_size'],
-        '-i', mash_args['input_seq'],
+        '-i', mash_args['input'],
         '-o', 'sketch',
     ]
         
@@ -62,6 +62,7 @@
     parser = argparse.ArgumentParser()
     parser.add_argument('data_manager_json')
     parser.add_argument('--threads', dest='threads', default=1, help='threads' )
+    parser.add_argument('--input', dest='input', help='Plasmid Assemblies (.fasta)')
     parser.add_argument('--kmer-size', dest='kmer_size', help='K-mer size' )
     parser.add_argument('--sketch-size', dest='sketch_size', help='Sketch size' )
     parser.add_argument('--database-name', dest='database_name', help='Database Name')
@@ -72,6 +73,7 @@
     target_directory = data_manager_input['output_data'][0]['extra_files_path']
 
     mash_args = {
+        'input': args.input,
         'kmer_size': args.kmer_size,
         'sketch_size': args.kmer_size,
         'threads': args.threads,