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view data_manager/mash_build_sketch.xml @ 1:7aea7633ec0b draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mash_sketch/ commit 423cf96266f6ac433052ff72edb1397502313010-dirty
author dfornika
date Thu, 25 Jul 2019 13:32:46 -0400
parents 6e90d7d564ee
children b8681a7aab8e
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<?xml version="1.0"?>
<tool id="mash_build_sketch" name="Mash Sketch Builder" tool_type="manage_data" version="2.1+galaxy0">
    <description>mash sketch builder</description>
    <requirements>
        <requirement type="package" version="2.1">mash</requirement>
        <requirement type="package" version="1.7.0">bagit</requirement>
    </requirements>
    <version_command>mash --version</version_command>
    <command detect_errors="exit_code">
    <![CDATA[
        python '$__tool_directory__/mash_build_sketch.py'
          '${out_file}'
          --threads \${GALAXY_SLOTS:-1}
          --kmer-size ${kmer_size}
          --sketch-size ${sketch_size}
    ]]>
    </command>
    <inputs>
        <param name="input" type="data" multiple="true" label="Sequences to sketch" />
        <param name="kmer_size" type="integer" min="1" max="32" value="21" label="K-mer size" />
        <param name="sketch_size" type="integer" min="100" max="1000000" value="1000" label="Sketch size" />
    </inputs>
    <outputs>
        <data name="out_file" format="data_manager_json" />
    </outputs>
    <help>
    </help>
    <citations>
        <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
    </citations>
</tool>