# HG changeset patch
# User dfornika
# Date 1571854686 14400
# Node ID 38c99b2942645ad6951b38f2463a747c05e6fd81
# Parent  bf6408089cbcfea4101319a01e9e4e1456a2bfd8
"planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 6f21145d4103d33c227f52dc55a7d3dcf52f4f5d-dirty"

diff -r bf6408089cbc -r 38c99b294264 data_manager/kraken2_build_database.py
--- a/data_manager/kraken2_build_database.py	Mon Jul 29 15:53:28 2019 -0400
+++ b/data_manager/kraken2_build_database.py	Wed Oct 23 14:18:06 2019 -0400
@@ -89,7 +89,7 @@
             '--clean',
             '--db', database_path
         ]
-        
+
         subprocess.check_call(['kraken2-build'] + args, cwd=target_directory)
 
     data_table_entry = {
diff -r bf6408089cbc -r 38c99b294264 data_manager/kraken2_build_database.xml
--- a/data_manager/kraken2_build_database.xml	Mon Jul 29 15:53:28 2019 -0400
+++ b/data_manager/kraken2_build_database.xml	Wed Oct 23 14:18:06 2019 -0400
@@ -1,11 +1,11 @@
 <?xml version="1.0"?>
-<tool id="kraken2_build_database" name="Kraken2" tool_type="manage_data" version="2.0.8_beta">
+<tool id="kraken2_build_database" name="Kraken2" tool_type="manage_data" version="2.0.8_beta_galaxy1">
     <macros>
         <xml name="common_params">
             <param name="kmer_len" type="integer" value="35" label="K-mer length in BP" />
             <param name="minimizer_len" type="integer" value="31" label="Minimizer length" />
             <param name="minimizer_spaces" type="integer" value="6" label="Minimizer spaces" />
-            <param name="clean" type="boolean" truevalue="--clean" falsevalue="" label="Clean up extra files" />
+            <param name="clean" type="boolean" truevalue="--clean" falsevalue="" checked="true" label="Clean up extra files" />
         </xml>
     </macros>
     <description>database builder</description>
@@ -87,7 +87,6 @@
             <param name="custom_fasta" value="adapter.fa" />
             <param name="custom_database_name" value="database" />
             <param name="skip_maps" value="true" />
-            <param name="clean" value="true" />
             <output name="out_file" value="kraken2_custom_data_manager.json" />
         </test>
     </tests>
diff -r bf6408089cbc -r 38c99b294264 data_manager_conf.xml
--- a/data_manager_conf.xml	Mon Jul 29 15:53:28 2019 -0400
+++ b/data_manager_conf.xml	Wed Oct 23 14:18:06 2019 -0400
@@ -1,5 +1,5 @@
 <data_managers>
-    <data_manager tool_file="data_manager/kraken2_build_database.xml" id="kraken2_build_database" version="2.0.8_beta">
+    <data_manager tool_file="data_manager/kraken2_build_database.xml" id="kraken2_build_database" version="2.0.8_beta_galaxy1">
         <data_table name="kraken2_databases">
             <output>
                 <column name="value"/>