# HG changeset patch
# User dfornika
# Date 1551321162 18000
# Node ID 2eb7850c74346079c359f34d77714b8416c9c339
# Parent  9f918cce82b2f5a5e3a2c5d56f0394171fc8c8cd
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 9b4d704c147761201fa9f1450fcf5ba6871104d8-dirty

diff -r 9f918cce82b2 -r 2eb7850c7434 data_manager/kraken2_standard_database_builder.xml
--- a/data_manager/kraken2_standard_database_builder.xml	Wed Feb 27 21:21:30 2019 -0500
+++ b/data_manager/kraken2_standard_database_builder.xml	Wed Feb 27 21:32:42 2019 -0500
@@ -7,16 +7,16 @@
     <version_command>kraken2 -version | head -n 1 | awk '{print $NF}'</version_command>
     <command detect_errors="exit_code">
     <![CDATA[
-	export KRAKEN2_DB_NAME="`date --iso-8601`_standard" &&
+	#set kraken2_db_name = datetime.datetime.today().strftime('%Y-%m-%d')
         mkdir kraken2_database && cd kraken2_database &&
         kraken2-build \
           --standard \
-          --db $KRAKEN2_DB_NAME \
+          --db ${kraken2_db_name} \
           --kmer-len ${kmer_len} \
           --minimizer-len ${minimizer_len} \
           --minimizer-spaces ${minimizer_spaces} &&
         cd .. &&
-        python '$__tool_directory__/make_json.py' --db $KRAKEN2_DB_NAME --out '${out_file}'
+        python '$__tool_directory__/make_json.py' --db ${kraken2_db_name} --out '${out_file}'
     ]]>
     </command>
     <inputs>