Mercurial > repos > dfornika > data_manager_build_kraken2_database

diff data_manager_conf.xml @ 1:f9a7275b1cad draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 9b4d704c147761201fa9f1450fcf5ba6871104d8-dirty
author dfornika
date Wed, 27 Feb 2019 20:48:06 -0500
parents b1805f086b66
children 7cea257d1e77
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--- a/data_manager_conf.xml	Wed Feb 27 20:42:33 2019 -0500
+++ b/data_manager_conf.xml	Wed Feb 27 20:48:06 2019 -0500
@@ -1,5 +1,20 @@
 <data_managers>
-    <data_manager tool_file="data_manager/kraken2_database_builder.xml" id="kraken2_database_builder" version="1.0">
+    <data_manager tool_file="data_manager/kraken2_custom_database_builder.xml" id="kraken2_custom_database_builder" version="1.0">
+	<data_table name="kraken2_databases">
+	    <output>
+		<column name="value"/>
+		<column name="name"/>
+		<column name="path" output_ref="out_file">
+		    <move type="directory" relativize_symlinks="True">
+			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target>
+		    </move>
+		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation>
+		    <value_translation type="function">abspath</value_translation>
+		</column>
+	    </output>
+	</data_table>
+    </data_manager>
+    <data_manager tool_file="data_manager/kraken2_standard_database_builder.xml" id="kraken2_standard_database_builder" version="1.0">
 	<data_table name="kraken2_databases">
 	    <output>
 		<column name="value"/>