diff data_manager/make_json.py @ 8:85447ce51182 draft

planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 682a16af9bce01ff23176dbce291034d67947e58-dirty

--- a/data_manager/make_json.py	Wed Feb 27 22:00:10 2019 -0500
+++ b/data_manager/make_json.py	Thu Feb 28 00:37:31 2019 -0500
@@ -9,11 +9,11 @@
     data_manager_entry['value'] = args.database.lower()
     data_manager_entry['name'] = args.database
     data_manager_entry['path'] = '.'
-    data_manager_json = dict(data_tables=dict(kraken_databases=data_manager_entry))
+    data_manager_json = dict(data_tables=dict(kraken2_databases=data_manager_entry))
     params = json.loads(open(args.output).read())
     target_directory = params['output_data'][0]['extra_files_path']
     os.mkdir(target_directory)
-    output_path = os.path.join(os.getcwd(), 'kraken-database')
+    output_path = os.path.join(os.getcwd(), 'kraken2-database')
     for filename in os.listdir(output_path):
         shutil.move(os.path.join(output_path, filename), target_directory)
     file(args.output, 'w').write(json.dumps(data_manager_json))