# HG changeset patch # User dfornika # Date 1582249162 0 # Node ID 4f42308a596e913693823dac9b85c29e897335fa # Parent ecda4a8ddb33ac5ae5e161a8ca8cd8942efff9ab Uploaded diff -r ecda4a8ddb33 -r 4f42308a596e chewbbaca_createschema.xml --- a/chewbbaca_createschema.xml Fri Feb 21 01:35:35 2020 +0000 +++ b/chewbbaca_createschema.xml Fri Feb 21 01:39:22 2020 +0000 @@ -1,5 +1,5 @@ - Adapt an external schema to be used with chewBBACA. + Create a gene by gene schema based on genomes chewbbaca @@ -7,9 +7,9 @@ chewBBACA.py CreateSchema --cpu \${GALAXY_SLOTS:-1} -i '${assemblies}' - #if str( $prodigal_training_file_source.prodigal_training_file_source_selector ) == 'tool_data_table' + #if str( $prodigal_training_file_source.prodigal_training_file_source_selector ) == 'tool_data_table': --ptf '${prodigal_training_file_source.prodigal_training_file.fields.path}' - #elif str( $prodigal_training_file_source.prodigal_training_file_source_selector ) == 'history' + #elif str( $prodigal_training_file_source.prodigal_training_file_source_selector ) == 'history': --ptf '${prodigal_training_file_source.prodigal_training_file}' #end if #if str( cds ) != "":