# HG changeset patch
# User dfornika
# Date 1572658862 14400
# Node ID 0f16e35124259d6da05f054a4959551051559cfd
# Parent  e87074bc1287488bd62edc934b7aef6d62dad1df
"planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/cgview commit 62e7cd82cb9b209bf3f797ae288916e88bbe8bc6-dirty"

diff -r e87074bc1287 -r 0f16e3512425 cgview_xml_builder.xml
--- a/cgview_xml_builder.xml	Fri Nov 01 21:37:07 2019 -0400
+++ b/cgview_xml_builder.xml	Fri Nov 01 21:41:02 2019 -0400
@@ -12,6 +12,8 @@
            -at_skew $at_skew
            -average $average
            -feature_labels $feature_labels
+           -use_opacity $use_opacity
+           -show_sequence_features $show_sequence_features
            -sequence '${reference}'
            -blast '${blast_output}'
            -output '${output}'
@@ -25,6 +27,8 @@
 	<param name="at_skew" type="boolean" truevalue="T" falsevalue="F" label="Display AT Skew" checked="false" help=""/>
 	<param name="average" type="boolean" truevalue="T" falsevalue="F" label="Display deviation of GC and AT values from the average for the entire genome." checked="true" help=""/>
 	<param name="feature_labels" type="boolean" truevalue="T" falsevalue="F" label="Display feature labels from GenBank file" checked="false" help=""/>
+	<param name="use_opacity" type="boolean" truevalue="T" falsevalue="F" label="Draw BLAST hits with partial opacity" checked="false" help=""/>
+        <param name="show_sequence_features" type="boolean" truevalue="T" falsevalue="F" label="Draw features in the reference (GenBank) file" checked="false" help=""/>
         <param name="blast_output" type="data" format="tabular" />
     </inputs>
     <outputs>