Mercurial > repos > dfornika > blast_report_basic

comparison blast_report.py @ 10:2b5862fee78e draft

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Uploaded
author dfornika
date Tue, 03 Mar 2020 06:10:20 +0000
parents 2cf43f15a971
children 9cf35f30bfb4
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9:2cf43f15a971 10:2b5862fee78e
113 if args.discard_redundant: 113 if args.discard_redundant:
114 print('Throwing out redundant hits...') 114 print('Throwing out redundant hits...')
115 115
116 116
117 PIDENT_COL = 2 117 PIDENT_COL = 2
118 DESCR_COL = 25 118 DESCR_COL = 24
119 SUBJ_ID_COL = 12 119 SUBJ_ID_COL = 12
120 SCORE_COL = 11 120 SCORE_COL = 11
121 PCOV_COL = 24 121 PCOV_COL = 25
122 queries = [] 122 queries = []
123 current_query = '' 123 current_query = ''
124 output_tab = open(args.output_tab, 'w') 124 output_tab = open(args.output_tab, 'w')
125 125
126 with open(args.input_tab) as input_tab: 126 with open(args.input_tab) as input_tab: