Mercurial > repos > dfornika > blast_report
view templates/template2.tmpl @ 1:a56a5519d60a draft
planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit bf63225facccd1b6fcf39681ee5fe0bc887b1695-dirty
author | dfornika |
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date | Wed, 11 Sep 2019 23:32:18 -0400 |
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#silent import time #set $display_m = 20 #set $header = '<tr class="header"><th>Accession</th><th>Description</th><th>Score</th><th>% Coverage</th><th>% Identity</th></tr>' <html> <head> <style> body { font-size:0.75em; } table, tr { width: 100%; } table { border-collapse: collapse; border: 1px solid black; } tr.header { background-color: lightgrey; } th { border: 1px solid black; } td { border-left: 1px solid black; border-right: 1px solid black; border-bottom: 1px dashed grey; } td.descr { font-size: 80%; } h3 { page-break-before: always; color: blue; } h3.first { page-break-before: avoid; } span.super { color: navy; font-size: 75%; vertical-align: top; } </style> <script> function toggle(id){ var element = document.getElementById(id) console.log(id) if (element.style.display == 'none') { //console.log(element.tagName); if (element.tagName == 'TBODY') element.style.display = 'table-row-group'; else if (element.tagName == 'TD') element.style.display = 'table-cell'; else element.style.display = 'block'; } else { element.style.display = 'none'; } } </script> </head> <body> #set $q = 0 #for $query in $queries #set $bin_symbols = dict([($bin,$i) for $i, $bin in enumerate($query.bins, 1)]) #set $m = 0 <h3 id="${query.query_id}" #if $q == 0 then'class="first"' else '' #>$query.query_id</h3> <br/> <table id="${query.query_id}_matches"> #set $num_of_euzby = -1 #if len($query.matches) == 0: <tr class="header"><th colspan="5">No matches to report</th></tr> </table> #else: $header #try #set $priority = $query.bins['Euzby'] #set $front = [] #for $i in reversed($priority) #silent $front.append($query.matches.pop($i)) #end for #set $num_of_euzby = len($front) #silent $front.reverse() #silent $front.extend($query.matches) #set $query.matches = $front #except #pass #end try #for $match in $query.matches: #if $m == $display_m <tbody id="${query.query_id}_extra" style="display:none"> #end if ##if $m>0 and set($match.bins)!=set($query.matches[m-1].bins) ##put an empty line to separate Euzby records from other records #if $m==$num_of_euzby and $m>0 <tr><td align="center" colspan="6"> </td></tr> #end if <tr> <td>$match.subject_acc <span class="super">#echo ', '.join(sorted([str($bin_symbols[$bin]) for $bin in $match.bins]))#</span></td> <td class="descr">$match.subject_descr</td> <td>$match.score</td> <td>$match.p_cov</td> <td>$match.p_ident</td> </tr> #set $m += 1 #end for #if $m >= $display_m </tbody> <td id="${query.query_id}_show" align="center" colspan="6" >Displaying ${display_m}/$m matches. <a href="#${query.query_id}_extra" onclick="toggle('${query.query_id}_extra'); toggle('${query.query_id}_show'); toggle('${query.query_id}_hide');">Show the remaining results.</a></td> <td id="${query.query_id}_hide" align="center" colspan="6" style="display:none"><a href="#${query.query_id}" onclick="toggle('${query.query_id}_extra'); toggle('${query.query_id}_show'); toggle('${query.query_id}_hide');">Hide the last #echo $m - $display_m # results.</a></td> <tr> </tr> #end if </table> #if len($bin_symbols) > 0: <p>#echo ', '.join(['<span class="super">%s</span> %s'%($bin_symbols[$bin],$bin) for $bin in $query.bins])#</p> #end if #end if #if $query.pident_filtered > 0: <p>$query.pident_filtered results filtered by % Identity.</p> #end if #if $query.kw_filtered > 0: <p>$query.kw_filtered results filtered by description keywords: #echo ', '.join(list(["%s matches to '%s'" % (str($query.kw_filtered_breakdown[$kw]),$kw) for $kw in $query.kw_filtered_breakdown])) #.</p> #end if <p>Report produced on #echo time.strftime("%d/%m/%Y") #.</p> <hr noshade size="1" color="blue"> #set $q += 1 #end for </body> </html>