Mercurial > repos > dfornika > blast_report

#silent import time
#set $display_m = 20
#set $header = '<tr class="header"><th>Accession</th><th>Description</th><th>Score</th><th>% Coverage</th><th>% Identity</th></tr>'
<html>
	<head>
		<style>
			body {
				font-size:0.75em;
			}
			table, tr {
				width: 100%;
			}
			table {
				border-collapse: collapse;
				border: 1px solid black;
			}
			tr.header {
				background-color: lightgrey;
			}
			th {
				border: 1px solid black;
			}
			td {
				border-left: 1px solid black;
				border-right: 1px solid black;
				border-bottom: 1px dashed grey;
			}
			td.descr {
				font-size: 80%;
			}
			h3 {
				page-break-before: always;
				color: blue;
			}
			h3.first {
				page-break-before: avoid;
			}
			span.super {
				color: navy;
				font-size: 75%;
				vertical-align: top;
			}
		</style>
		<script>
			function toggle(id){
				var element = document.getElementById(id)
				console.log(id)
				if (element.style.display == 'none') {
					//console.log(element.tagName);
					if (element.tagName == 'TBODY') element.style.display = 'table-row-group';
					else if (element.tagName == 'TD') element.style.display = 'table-cell';
					else element.style.display = 'block';
				} else {
					element.style.display = 'none';
				}
			}
		</script>
	</head>
	<body>
		#set $q = 0
		#for $query in $queries
			#set $bin_symbols = dict([($bin,$i) for $i, $bin in enumerate($query.bins, 1)])
			#set $m = 0
			<h3 id="${query.query_id}" #if $q == 0 then'class="first"' else '' #>$query.query_id</h3>
			<br/>
			<table id="${query.query_id}_matches">
			#if len($query.matches) == 0:
				<tr class="header"><th colspan="5">No matches to report</th></tr>
			</table>
			#else:
			$header
			#for $match in $query.matches:
				#if $m == $display_m
				<tbody id="${query.query_id}_extra" style="display:none">
				#end if
				<tr>
					<td>$match.subject_acc <span class="super">#echo ', '.join(sorted([str($bin_symbols[$bin]) for $bin in $match.bins]))#</span></td>
					<td class="descr">$match.subject_descr</td>
					<td>$match.score</td>
					<td>$match.p_cov</td>
					<td>$match.p_ident</td>
				</tr>
			#set $m += 1
			#end for
			#if $m >= $display_m
			</tbody>
				<td id="${query.query_id}_show" align="center" colspan="6" >Displaying ${display_m}/$m matches. <a href="#${query.query_id}_extra" onclick="toggle('${query.query_id}_extra'); toggle('${query.query_id}_show'); toggle('${query.query_id}_hide');">Show the remaining results.</a></td>
				<td id="${query.query_id}_hide" align="center" colspan="6" style="display:none"><a href="#${query.query_id}" onclick="toggle('${query.query_id}_extra'); toggle('${query.query_id}_show'); toggle('${query.query_id}_hide');">Hide the last #echo $m - $display_m # results.</a></td>
			<tr>
			</tr>
			#end if
			</table>
			#if len($bin_symbols) > 0:
			<p>#echo ', '.join(['<span class="super">%s</span> %s'%($bin_symbols[$bin],$bin) for $bin in $query.bins])#</p>
			#end if
			#end if
			#if $query.pident_filtered > 0:
			<p>$query.pident_filtered results filtered by % Identity.</p>
			#end if
			#if $query.kw_filtered > 0:
			<p>$query.kw_filtered results filtered by description keywords: #echo ', '.join(list(["%s matches to '%s'" % (str($query.kw_filtered_breakdown[$kw]),$kw) for $kw in $query.kw_filtered_breakdown])) #.</p>
			#end if
			<p>Report produced on #echo time.strftime("%d/%m/%Y") #.</p>
			<hr noshade size="1" color="blue">
		#set $q += 1
		#end for
	</body>
</html>
author	dfornika
date	Wed, 11 Sep 2019 23:32:18 -0400
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