comparison blast_report.xml @ 4:d6423655d2b5 draft

planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/blast_report commit e8b469f0fed66159f07bfc3904b0c4bce9a16d09-dirty

3:ca70ffc00185

        ]]>
    </command>
    <inputs>
        <param name="in_tab" type="data" format="tabular" label="Tabular BLAST results (extended 26 columns)"/>
        <param name="tmpl" type="select" optional="false" label="Report template">
            <options from_file="bccdc_blast_report_templates.loc">
                <column name="value" index="1"/>
                <column name="name" index="0"/>
            </options>
        </param>
        <param name="filter_pident" type="integer" min="90" max="100" value="97" label="Minimum percentage identity"/>
        <param name="filter_kws" type="text" size="50" label="Comma-separated list of description keyword filters" value="bovine,clone,environmental,swine,uncultivated,uncultured,unidentified"/>
        <param name="bins" type="select" label="Database bins" multiple="true" display="checkboxes">
            <options from_data_table="blast_report_bins">
                <column name="value" index="1"/>
                <column name="name" index="0"/>
            </options>
        </param>
        <!--<repeat name="hist_bins" title="History database bins">
            <param name="filter" type="data" format="csv" label="History database bin"/>
        </repeat>-->

4:d6423655d2b5

        ]]>
    </command>
    <inputs>
        <param name="in_tab" type="data" format="tabular" label="Tabular BLAST results (extended 26 columns)"/>
        <param name="tmpl" type="select" optional="false" label="Report template">
            <options from_data_table="blast_report_templates">
                <column name="value" index="0"/>
                <column name="name" index="1"/>
            </options>
        </param>
        <param name="filter_pident" type="integer" min="90" max="100" value="97" label="Minimum percentage identity"/>
        <param name="filter_kws" type="text" size="50" label="Comma-separated list of description keyword filters" value="bovine,clone,environmental,swine,uncultivated,uncultured,unidentified"/>
        <param name="bins" type="select" label="Database bins" multiple="true" display="checkboxes">
            <options from_data_table="blast_report_bins">
                <column name="value" index="0"/>
                <column name="name" index="1"/>
            </options>
        </param>
        <!--<repeat name="hist_bins" title="History database bins">
            <param name="filter" type="data" format="csv" label="History database bin"/>
        </repeat>-->