view augur_filter.xml @ 1:892c6690a1e8 draft default tip

planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/augur commit a71ecf1b4a86227084935c6f60dfd130b7d0997b-dirty

<tool id="augur_filter" name="augur filter" version="@TOOL_VERSION@+galaxy0">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">augur</requirement>
    </requirements>
    <version_command>augur --version</version_command>
    <command detect_errors="exit_code"><![CDATA[
        augur filter
          --sequences '$sequences'
          --metadata '$metadata'
          --exclude '$exclude'
          --output '$output'
    ]]></command>
    <inputs>
        <param name="sequences" type="data" format="fasta" label="Sequences"/>
        <param name="metadata" type="data" format="tabular" label="Metadata"/>
        <param name="exclude" type="data" format="tabular" label="Excluded Strains"/>
    </inputs>
    <outputs>
      <data name="output" format="fasta" />
    </outputs>
    <tests>
        <test>
            <param name="sequences" value="augur_filter_test_0_sequences.input.fasta" />
            <param name="metadata" value="augur_filter_test_0_metadata.input.csv" />
            <param name="exclude" value="augur_filter_test_0_excluded_strains.input.csv" />
            <output name="output" file="augur_filter_test_0_output.output.fasta" />
        </test>
    </tests>
    <help><![CDATA[
Filter and subsample a sequence set.
    ]]></help>
    <expand macro="citations" />
</tool>