Mercurial > repos > dfornika > artic_minion

changeset 2:08558c991bf8 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/artic commit 223458c93329ccfb3b38e9e660dec043c470f8f1-dirty"
author dfornika
date Wed, 29 Apr 2020 17:02:01 +0000
parents c787a74cc2a4
children 39c2f17a4ad4
files artic_minion.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/artic_minion.xml	Wed Apr 29 16:47:10 2020 +0000
+++ b/artic_minion.xml	Wed Apr 29 17:02:01 2020 +0000
@@ -20,7 +20,7 @@
         artic minion
             --threads \${GALAXY_SLOTS:-1}
             --normalise '${normalise}'
-            --read-file '${read-file}'
+            --read-file '${read_file}'
             --scheme-directory 'scheme'
             --medaka
             $bwa
@@ -28,7 +28,7 @@
             '${read_file.element_identifier}'
     ]]></command>
     <inputs>
-        <param argument="--read-file" type="data" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" label="Input Read File"/>
+        <param name="read_file" argument="--read-file" type="data" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" label="Input Read File"/>
         <param argument="--normalise" type="integer" min="1" value="200" max="2000" label="Coverage normalisation depth"/>
         <param argument="--bwa" type="boolean" truevalue="--bwa" falsevalue="" label="Use bwa aligner"/>
         <conditional name="primer_scheme_source">