comparison artic_minion.xml @ 4:f0dd24083241 draft default tip

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3:39c2f17a4ad4

            $bwa
            'name/version'
            '${read_file.element_identifier}'
    ]]></command>
    <inputs>
        <param argument="--read-file" type="data" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" label="Input Read File"/>
        <param argument="--normalise" type="integer" min="1" value="200" max="2000" label="Coverage normalisation depth"/>
        <param argument="--bwa" type="boolean" truevalue="--bwa" falsevalue="" label="Use bwa aligner"/>
        <conditional name="primer_scheme_source">
            <param name="primer_scheme_source_selector" type="select" label="Select a primer scheme from your history or use one from a tool data table?"
                   help="Screening files must be stored in the 'primer_scheme_bedfiles' tool data table">

4:f0dd24083241

            $bwa
            'name/version'
            '${read_file.element_identifier}'
    ]]></command>
    <inputs>
        <param name="read_file" argument="--read-file" type="data" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" label="Input Read File"/>
        <param argument="--normalise" type="integer" min="1" value="200" max="2000" label="Coverage normalisation depth"/>
        <param argument="--bwa" type="boolean" truevalue="--bwa" falsevalue="" label="Use bwa aligner"/>
        <conditional name="primer_scheme_source">
            <param name="primer_scheme_source_selector" type="select" label="Select a primer scheme from your history or use one from a tool data table?"
                   help="Screening files must be stored in the 'primer_scheme_bedfiles' tool data table">