Mercurial > repos > dfornika > artic_minion
comparison artic_minion.xml @ 4:f0dd24083241 draft default tip
Uploaded
author | dfornika |
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date | Mon, 08 Jun 2020 21:45:15 +0000 |
parents | 39c2f17a4ad4 |
children |
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3:39c2f17a4ad4 | 4:f0dd24083241 |
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26 $bwa | 26 $bwa |
27 'name/version' | 27 'name/version' |
28 '${read_file.element_identifier}' | 28 '${read_file.element_identifier}' |
29 ]]></command> | 29 ]]></command> |
30 <inputs> | 30 <inputs> |
31 <param argument="--read-file" type="data" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" label="Input Read File"/> | 31 <param name="read_file" argument="--read-file" type="data" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz" label="Input Read File"/> |
32 <param argument="--normalise" type="integer" min="1" value="200" max="2000" label="Coverage normalisation depth"/> | 32 <param argument="--normalise" type="integer" min="1" value="200" max="2000" label="Coverage normalisation depth"/> |
33 <param argument="--bwa" type="boolean" truevalue="--bwa" falsevalue="" label="Use bwa aligner"/> | 33 <param argument="--bwa" type="boolean" truevalue="--bwa" falsevalue="" label="Use bwa aligner"/> |
34 <conditional name="primer_scheme_source"> | 34 <conditional name="primer_scheme_source"> |
35 <param name="primer_scheme_source_selector" type="select" label="Select a primer scheme from your history or use one from a tool data table?" | 35 <param name="primer_scheme_source_selector" type="select" label="Select a primer scheme from your history or use one from a tool data table?" |
36 help="Screening files must be stored in the 'primer_scheme_bedfiles' tool data table"> | 36 help="Screening files must be stored in the 'primer_scheme_bedfiles' tool data table"> |