# HG changeset patch # User dfornika # Date 1583880768 0 # Node ID 26516cf264447479096a0fffb904dc7cc284a959 # Parent c63329be5b2d517fd179ac191476cbfcdb6642c6 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/artic_align_trim commit 374121821497c96c8450afda266951c2f431ba11-dirty" diff -r c63329be5b2d -r 26516cf26444 align_trim.py --- a/align_trim.py Tue Mar 10 22:48:27 2020 +0000 +++ b/align_trim.py Tue Mar 10 22:52:48 2020 +0000 @@ -5,6 +5,7 @@ # This file adapted from ARTICnetwork 'fieldbioinformatics' pipeline: # https://github.com/artic-network/fieldbioinformatics +import csv import sys from collections import defaultdict