Mercurial > repos > devteam > xy_plot
comparison r_wrapper.sh @ 3:2d28f96a309a draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/xy_plot commit facdb350072c8492654c90040fea3109dc9b51cd
| author | devteam |
|---|---|
| date | Wed, 07 Dec 2016 18:29:11 -0500 |
| parents | 1cdc54f92956 |
| children |
comparison
equal
deleted
inserted
replaced
| 2:7fb3b742f15f | 3:2d28f96a309a |
|---|---|
| 1 #!/bin/sh | 1 #!/bin/sh |
| 2 | 2 |
| 3 ### Run R providing the R script in $1 as standard input and passing | 3 ### Run R providing the R script in $1 as standard input and passing |
| 4 ### the remaining arguments on the command line | 4 ### the remaining arguments on the command line |
| 5 | 5 |
| 6 # Function that writes a message to stderr and exits | 6 # Function that writes a message to stderr and exits |
| 7 function fail | 7 function fail |
| 8 { | 8 { |
| 9 echo "$@" >&2 | 9 echo "$@" >&2 |
| 10 exit 1 | 10 exit 1 |
| 11 } | 11 } |
| 12 | 12 |
| 13 # Ensure R executable is found | 13 # Ensure R executable is found |
| 14 which R > /dev/null || fail "'R' is required by this tool but was not found on path" | 14 which R > /dev/null || fail "'R' is required by this tool but was not found on path" |
| 15 | 15 |
| 16 # Extract first argument | 16 # Extract first argument |
| 17 infile=$1; shift | 17 infile=$1; shift |
| 18 | 18 |
| 19 # Ensure the file exists | 19 # Ensure the file exists |
