Mercurial > repos > devteam > weightedaverage
comparison WeightedAverage.xml @ 1:68a40b074399 draft default tip
Uploaded corrected tool requirements definition.
| author | devteam |
|---|---|
| date | Thu, 03 Apr 2014 09:34:00 -0400 |
| parents | e11314245c2a |
| children |
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| 0:e11314245c2a | 1:68a40b074399 |
|---|---|
| 1 <tool id="wtavg" name="Assign weighted-average" version="1.0.0"> | 1 <tool id="wtavg" name="Assign weighted-average" version="1.0.0"> |
| 2 <description> of the values of features overlapping an interval </description> | 2 <description> of the values of features overlapping an interval </description> |
| 3 <requirements> | |
| 4 <requirement type="package" version="1.0.0">galaxy-ops</requirement> | |
| 5 <requirement type="package" version="0.7.1">bx-python</requirement> | |
| 6 </requirements> | |
| 3 <command interpreter="python">WeightedAverage.py $genomic_interval $genomic_feature $out_file1 -1 ${genomic_interval.metadata.chromCol},${genomic_interval.metadata.startCol},${genomic_interval.metadata.endCol},${genomic_interval.metadata.strandCol} -2 ${genomic_feature.metadata.chromCol},${genomic_feature.metadata.startCol},${genomic_feature.metadata.endCol},${genomic_feature.metadata.strandCol},${genomic_feature.metadata.nameCol}</command> | 7 <command interpreter="python">WeightedAverage.py $genomic_interval $genomic_feature $out_file1 -1 ${genomic_interval.metadata.chromCol},${genomic_interval.metadata.startCol},${genomic_interval.metadata.endCol},${genomic_interval.metadata.strandCol} -2 ${genomic_feature.metadata.chromCol},${genomic_feature.metadata.startCol},${genomic_feature.metadata.endCol},${genomic_feature.metadata.strandCol},${genomic_feature.metadata.nameCol}</command> |
| 4 | 8 |
| 5 <inputs> | 9 <inputs> |
| 6 <param format="interval" name="genomic_interval" type="data" label="Genomic intervals (first dataset)" help="Dataset missing? See Note below."/> | 10 <param format="interval" name="genomic_interval" type="data" label="Genomic intervals (first dataset)" help="Dataset missing? See Note below."/> |
| 7 <param format="interval" name="genomic_feature" label="Genomic features (second dataset)" type="data" help="Make sure the value column is specified. See Note below." /> | 11 <param format="interval" name="genomic_feature" label="Genomic features (second dataset)" type="data" help="Make sure the value column is specified. See Note below." /> |