Mercurial > repos > devteam > weblogo3
comparison rgWebLogo3.py @ 2:ced02f5334a0 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/weblogo3 commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
| author | devteam |
|---|---|
| date | Fri, 18 Dec 2015 19:20:26 -0500 |
| parents | f64b81fda062 |
| children | 13045f6015cb |
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| 1:d16cc2d33359 | 2:ced02f5334a0 |
|---|---|
| 103 flen = seqlen | 103 flen = seqlen |
| 104 else: | 104 else: |
| 105 if seqlen <> flen: | 105 if seqlen <> flen: |
| 106 print >> sys.stderr,self.badseq % self.opts.input | 106 print >> sys.stderr,self.badseq % self.opts.input |
| 107 sys.exit(1) | 107 sys.exit(1) |
| 108 return '# weblogo input %s has %d sequences all of length %d' % (self.opts.input,lasti,flen) | 108 return '# weblogo input %s has %d sequences all of length %d' % (self.opts.input, lasti+1, flen) |
| 109 | 109 |
| 110 | 110 |
| 111 def run(self): | 111 def run(self): |
| 112 check = self.fcheck() | 112 check = self.fcheck() |
| 113 self.clparams['-f'] = self.opts.input | 113 self.clparams['-f'] = self.opts.input |