# HG changeset patch
# User devteam
# Date 1447090552 18000
# Node ID 60743b92cc268cbf3eb3beccc3c2c2666f340fc1
# Parent eb02907453b4d9f8f84bdc979a13cc1bb58daefb
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcftools/vcftools_merge commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
diff -r eb02907453b4 -r 60743b92cc26 tool_dependencies.xml
--- a/tool_dependencies.xml Sun Nov 24 11:42:14 2013 -0500
+++ b/tool_dependencies.xml Mon Nov 09 12:35:52 2015 -0500
@@ -1,6 +1,6 @@
-
+
diff -r eb02907453b4 -r 60743b92cc26 vcftools_merge.xml
--- a/vcftools_merge.xml Sun Nov 24 11:42:14 2013 -0500
+++ b/vcftools_merge.xml Mon Nov 09 12:35:52 2015 -0500
@@ -1,17 +1,17 @@
-
+
multiple VCF datasets
tabix
vcftools
-
+
## Preprocessing for each dataset.
#set dataset_names = []
- #for i, $input in enumerate( $inputs ):
- ## Sort file.
- vcf-sort ${input.file} > ${i}.vcf.sorted ;
+ #for $i, $input in enumerate( $input_files ):
+ ## Sort file.
+ vcf-sort ${input} > ${i}.vcf.sorted ;
## Compress.
bgzip ${i}.vcf.sorted ;
@@ -25,12 +25,10 @@
## Merge.
vcf-merge
#echo ' '.join( dataset_names ) # > ${output}
-
+
-
-
-
+