# HG changeset patch # User devteam # Date 1447090537 18000 # Node ID 9e576efe7836d4823ef0aaefdc3d84215fd5b997 # Parent 799feac145c8abe5ebb4052278edf0c62ab43a8f planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcftools/vcftools_isec commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b diff -r 799feac145c8 -r 9e576efe7836 tool_dependencies.xml --- a/tool_dependencies.xml Sun Nov 24 11:12:03 2013 -0500 +++ b/tool_dependencies.xml Mon Nov 09 12:35:37 2015 -0500 @@ -1,6 +1,6 @@ - + diff -r 799feac145c8 -r 9e576efe7836 vcftools_isec.xml --- a/vcftools_isec.xml Sun Nov 24 11:12:03 2013 -0500 +++ b/vcftools_isec.xml Mon Nov 09 12:35:37 2015 -0500 @@ -1,17 +1,17 @@ - + multiple VCF datasets tabix vcftools - + ## Preprocessing for each dataset. #set dataset_names = [] - #for i, $input in enumerate( $inputs ): + #for i, $input in enumerate( $input_files ): ## Sort file. - vcf-sort ${input.file} > ${i}.vcf.sorted ; + vcf-sort ${input} > ${i}.vcf.sorted ; ## Compress. bgzip ${i}.vcf.sorted ; @@ -26,13 +26,11 @@ vcf-isec -f #if $complement: -c - #end if + #end if #echo ' '.join( dataset_names ) # > ${output} - - - + @@ -47,8 +45,8 @@