# HG changeset patch
# User devteam
# Date 1444755558 14400
# Node ID a6e0edfcfdaecd5a67cd5cc999773d3b55942cd2
# Parent  01bb3234beb9502dd0145cbb8d0782fd681290c0
planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734

diff -r 01bb3234beb9 -r a6e0edfcfdae tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Nov 24 10:56:14 2013 -0500
+++ b/tool_dependencies.xml	Tue Oct 13 12:59:18 2015 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="vcftools" version="0.1.11">
-        <repository changeset_revision="4081df719fff" name="package_vcftools_0_1_11" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="4081df719fff" name="package_vcftools_0_1_11" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>
diff -r 01bb3234beb9 -r a6e0edfcfdae vcftools_annotate.xml
--- a/vcftools_annotate.xml	Sun Nov 24 10:56:14 2013 -0500
+++ b/vcftools_annotate.xml	Tue Oct 13 12:59:18 2015 -0400
@@ -1,5 +1,5 @@
 <tool id="vcftools_annotate" name="Annotate" version="0.1">
-    <description>a VCF dataset with filters</description>
+    <description>a VCF dataset with custom filters</description>
 
     <requirements>
         <requirement type="binary">echo</requirement>
@@ -47,8 +47,14 @@
     </tests>
 
     <help>
-        Please see the VCFtools `documentation`__ for help and further information.
+Annotates VCF dataset with custom annotations. For example, if this format tag is used for allele frequency:
+
+##FORMAT=&lt;ID=FREQ,Number=1,Type=String,Description=&quot;Variant allele frequency&quot;&gt;
 
-        .. __: http://vcftools.sourceforge.net/docs.html
+you can add a filter for allele frequency using &quot;FORMAT/FREQ&quot; as the tag name and the condition &quot;>= [desired allele freq]&quot;
+
+Please see the VCFtools `documentation`__ for help and further information.
+
+.. __: http://vcftools.sourceforge.net/perl_module.html#vcf-annotate
     </help>
 </tool>