comparison vcftools_annotate.xml @ 6:a6e0edfcfdae draft default tip

planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734

5:01bb3234beb9

<tool id="vcftools_annotate" name="Annotate" version="0.1">
    <description>a VCF dataset with filters</description>

    <requirements>
        <requirement type="binary">echo</requirement>
        <requirement type="package" version="0.1.11">vcftools</requirement>
    </requirements>

            <output name="output" file="test_out1.vcf" lines_diff="2" />
        </test>
    </tests>

    <help>
        Please see the VCFtools `documentation`__ for help and further information.

        .. __: http://vcftools.sourceforge.net/docs.html
    </help>
</tool>

6:a6e0edfcfdae

<tool id="vcftools_annotate" name="Annotate" version="0.1">
    <description>a VCF dataset with custom filters</description>

    <requirements>
        <requirement type="binary">echo</requirement>
        <requirement type="package" version="0.1.11">vcftools</requirement>
    </requirements>

            <output name="output" file="test_out1.vcf" lines_diff="2" />
        </test>
    </tests>

    <help>
Annotates VCF dataset with custom annotations. For example, if this format tag is used for allele frequency:

##FORMAT=&lt;ID=FREQ,Number=1,Type=String,Description=&quot;Variant allele frequency&quot;&gt;

you can add a filter for allele frequency using &quot;FORMAT/FREQ&quot; as the tag name and the condition &quot;>= [desired allele freq]&quot;

Please see the VCFtools `documentation`__ for help and further information.

.. __: http://vcftools.sourceforge.net/perl_module.html#vcf-annotate
    </help>
</tool>