Mercurial > repos > devteam > vcfsort
changeset 3:24f96edb5b29 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfsort commit 36e9065027cc7bf721e9d203208477ee88906c57"
| author | iuc |
|---|---|
| date | Thu, 23 Jan 2020 12:59:45 +0000 |
| parents | d92d6f631ff5 |
| children | 694dfc3f5d45 |
| files | macros.xml vcfsort.xml |
| diffstat | 2 files changed, 9 insertions(+), 9 deletions(-) [+] |
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--- a/macros.xml Mon Mar 26 12:16:24 2018 -0400 +++ b/macros.xml Thu Jan 23 12:59:45 2020 +0000 @@ -1,7 +1,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="1.0.0_rc1">vcflib</requirement> + <requirement type="package" version="1.0.0_rc3">vcflib</requirement> <yield/> </requirements> </xml> @@ -10,10 +10,10 @@ <exit_code range="1:" level="fatal" /> </stdio> </xml> - <token name="@WRAPPER_VERSION@">1.0.0_rc1</token> - <xml name="citations"> - <citations> - <citation type="bibtex"> + <token name="@WRAPPER_VERSION@">1.0.0_rc3</token> + <xml name="citations"> + <citations> + <citation type="bibtex"> @misc{Garrison2015, author = {Garrison, Erik}, year = {2015}, @@ -22,8 +22,8 @@ journal = {GitHub repository}, url = {https://github.com/ekg/vcflib}, } - </citation> - </citations> - </xml> + </citation> + </citations> + </xml> <token name="@IS_PART_OF_VCFLIB@">is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).</token> </macros>
--- a/vcfsort.xml Mon Mar 26 12:16:24 2018 -0400 +++ b/vcfsort.xml Thu Jan 23 12:59:45 2020 +0000 @@ -4,7 +4,7 @@ <import>macros.xml</import> </macros> <command><![CDATA[ -(grep ^"#" "${input1}" && grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}" +(grep ^"#" "${input1}" && grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > '${out_file1}' ]]></command> <inputs> <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>