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diff vcfsort.xml @ 3:24f96edb5b29 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfsort commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 12:59:45 +0000
parents d92d6f631ff5
children 694dfc3f5d45
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line diff
--- a/vcfsort.xml	Mon Mar 26 12:16:24 2018 -0400
+++ b/vcfsort.xml	Thu Jan 23 12:59:45 2020 +0000
@@ -4,7 +4,7 @@
         <import>macros.xml</import>
     </macros>
     <command><![CDATA[
-(grep ^"#" "${input1}" && grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}"
+(grep ^"#" "${input1}" && grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > '${out_file1}'
     ]]></command>
     <inputs>
         <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>