Mercurial > repos > devteam > vcfsort
comparison vcfsort.xml @ 4:694dfc3f5d45 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfsort commit 9a0c41967765d120a8fc519c0c7f09cbe3a6efbe"
| author | iuc |
|---|---|
| date | Fri, 03 Sep 2021 21:14:18 +0000 |
| parents | 24f96edb5b29 |
| children | 4f148dd50583 |
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| 3:24f96edb5b29 | 4:694dfc3f5d45 |
|---|---|
| 1 <tool id="vcfsort" name="VCFsort:" version="@WRAPPER_VERSION@+galaxy0"> | 1 <tool id="vcfsort" name="VCFsort:" version="@WRAPPER_VERSION@+galaxy0"> |
| 2 <description>Sort VCF dataset by coordinate</description> | 2 <description>Sort VCF dataset by coordinate</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <requirements> | |
| 7 <requirement type="package" version="8.31">coreutils</requirement> | |
| 8 </requirements> | |
| 6 <command><![CDATA[ | 9 <command><![CDATA[ |
| 7 (grep ^"#" "${input1}" && grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > '${out_file1}' | 10 (grep ^"#" "${input1}" && grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > '${out_file1}' |
| 8 ]]></command> | 11 ]]></command> |
| 9 <inputs> | 12 <inputs> |
| 10 <param format="vcf" name="input1" type="data" label="Select VCF dataset"/> | 13 <param format="vcf" name="input1" type="data" label="Select VCF dataset"/> |