Mercurial > repos > devteam > vcfrandomsample
comparison vcfrandomsample.xml @ 3:f7e6495859b9 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfrandomsample commit 36e9065027cc7bf721e9d203208477ee88906c57"
| author | iuc |
|---|---|
| date | Thu, 23 Jan 2020 12:58:59 +0000 |
| parents | 939834d8de40 |
| children |
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| 2:939834d8de40 | 3:f7e6495859b9 |
|---|---|
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 7 <expand macro="stdio" /> | 7 <expand macro="stdio" /> |
| 8 <command> | 8 <command> |
| 9 vcfrandomsample | 9 vcfrandomsample |
| 10 #if $adv_options.adv_options_selector == "use_adv_controls": | 10 #if $adv_options.adv_options_selector == "use_adv_controls": |
| 11 -s "${adv_options.scale_by}" | 11 -s '${adv_options.scale_by}' |
| 12 #end if | 12 #end if |
| 13 -p ${random_seed} | 13 -p ${random_seed} |
| 14 -r ${rate} | 14 -r ${rate} |
| 15 "${vcf_input}" > "${out_file1}" | 15 '${vcf_input}' > '${out_file1}' |
| 16 </command> | 16 </command> |
| 17 <inputs> | 17 <inputs> |
| 18 <param format="vcf" name="vcf_input" type="data" label="Select random sites from"/> | 18 <param format="vcf" name="vcf_input" type="data" label="Select random sites from"/> |
| 19 <param name="rate" type="float" value="0.1" label="base sampling probability per locus" help="-r, --rate"/> | 19 <param name="rate" type="float" value="0.1" label="base sampling probability per locus" help="-r, --rate"/> |
| 20 <param name="random_seed" type="integer" value="17823618326" label="use this random seed" | 20 <param name="random_seed" type="integer" value="17823618326" label="use this random seed" |