comparison vcfrandomsample.xml @ 2:939834d8de40 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfrandomsample commit c2af291b241e37e0a55adbc1fc72a9fa37d93582

1:03030ecd1961

<tool id="vcfrandomsample" name="VCFrandomSample:" version="@WRAPPER_VERSION@.0">
    <description>Randomly sample sites from VCF dataset</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>

        <conditional name="adv_options">
            <param name="adv_options_selector" type="select" label="Advanced controls" help="Allows you to specify options that are not listed above">
                <option value="no">Don't use advanced options</option>
                <option value="use_adv_controls">Use advanced options</option>
            </param>
            <when value="" />
            <when value="use_adv_controls">
                <param name="scale_by" type="text" value="AF" label="scale sampling likelihood by this INFO field" help="-s, --scale-by; this only works for Float info fields such as AF" />
            </when>
        </conditional>
    </inputs>

            <param name="adv_options_selector" value="no" />
            <output name="out_file1" file="vcfrandomsample-test1.vcf" lines_diff="2" />
        </test>
    </tests>
    <help>

Randomly sample sites from an input VCF dataset. Scale the sampling probability by the field specified by --scale-by (see advanced controls).  This may be
used to provide uniform sampling across allele frequencies, for instance (AF field in this case).

----

2:939834d8de40

<tool id="vcfrandomsample" name="VCFrandomSample:" version="@WRAPPER_VERSION@+galaxy0">
    <description>Randomly sample sites from VCF dataset</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>

        <conditional name="adv_options">
            <param name="adv_options_selector" type="select" label="Advanced controls" help="Allows you to specify options that are not listed above">
                <option value="no">Don't use advanced options</option>
                <option value="use_adv_controls">Use advanced options</option>
            </param>
            <when value="no" />
            <when value="use_adv_controls">
                <param name="scale_by" type="text" value="AF" label="scale sampling likelihood by this INFO field" help="-s, --scale-by; this only works for Float info fields such as AF" />
            </when>
        </conditional>
    </inputs>

            <param name="adv_options_selector" value="no" />
            <output name="out_file1" file="vcfrandomsample-test1.vcf" lines_diff="2" />
        </test>
    </tests>
    <help>
Randomly sample sites from an input VCF dataset. Scale the sampling probability by the field specified by --scale-by (see advanced controls).  This may be
used to provide uniform sampling across allele frequencies, for instance (AF field in this case).

----