Mercurial > repos > devteam > vcfhethom
comparison vcfhethom.xml @ 1:4d7bf6277295 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfhethom commit 0b9b6512272b82637c2f1e831367e89aed77ae79
| author | devteam |
|---|---|
| date | Thu, 15 Sep 2016 16:05:37 -0400 |
| parents | 1de250ea8c1a |
| children | d3482e14d5a4 |
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| 0:1de250ea8c1a | 1:4d7bf6277295 |
|---|---|
| 1 <tool id="vcfhethom" name="VCFhetHomAlleles:" version="0.0.3"> | 1 <tool id="vcfhethom" name="VCFhetHomAlleles:" version="@WRAPPER_VERSION@.0"> |
| 2 <description>Count the number of heterozygotes and alleles, compute het/hom ratio</description> | 2 <description>Count the number of heterozygotes and alleles, compute het/hom ratio</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"></expand> | 6 <expand macro="requirements"/> |
| 7 <expand macro="stdio" /> | 7 <expand macro="stdio" /> |
| 8 <command> | 8 <command> |
| 9 | 9 |
| 10 #if str($analysis_type) == "count": | 10 #if str($analysis_type) == "count": |
| 11 vcfhetcount "${vcf_input}" > "${out_file1}" | 11 vcfhetcount "${vcf_input}" > "${out_file1}" |
| 13 vcfhethomratio "${vcf_input}" > "${out_file1}" | 13 vcfhethomratio "${vcf_input}" > "${out_file1}" |
| 14 #elif str($analysis_type) == "allele_count": | 14 #elif str($analysis_type) == "allele_count": |
| 15 vcfcountalleles "${vcf_input}" > "${out_file1}" | 15 vcfcountalleles "${vcf_input}" > "${out_file1}" |
| 16 #end if | 16 #end if |
| 17 | 17 |
| 18 </command> | 18 </command> |
| 19 | |
| 20 <inputs> | 19 <inputs> |
| 21 <param name="analysis_type" type="select" display="radio" label="Select type of calculation:"> | 20 <param name="analysis_type" type="select" display="radio" label="Select type of calculation:"> |
| 22 <option value="count">Compute the number of heterozygotes</option> | 21 <option value="count">Compute the number of heterozygotes</option> |
| 23 <option value="ratio">Compute the ratio between heterozygotes and homozygotes</option> | 22 <option value="ratio">Compute the ratio between heterozygotes and homozygotes</option> |
| 24 <option value="allele_count">Compute the total number of alleles</option> | 23 <option value="allele_count">Compute the total number of alleles</option> |