# HG changeset patch
# User devteam
# Date 1473969915 14400
# Node ID 30963674e8fd0e5b0d23efbade489b0ff4a4c1c5
# Parent  a1a3b63d2af2dce742a5f5603b90e9cde7f9bc94
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfgenotypes commit 0b9b6512272b82637c2f1e831367e89aed77ae79

diff -r a1a3b63d2af2 -r 30963674e8fd macros.xml
--- a/macros.xml	Mon Nov 09 12:32:49 2015 -0500
+++ b/macros.xml	Thu Sep 15 16:05:15 2016 -0400
@@ -1,7 +1,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="8a5602bf07">vcflib</requirement>
+            <requirement type="package" version="1.0.0_rc1">vcflib</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -10,6 +10,7 @@
             <exit_code range="1:" level="fatal" />
         </stdio>
     </xml>
+   <token name="@WRAPPER_VERSION@">1.0.0_rc1</token>
    	<xml name="citations">
    	     <citations>
              <citation type="bibtex">
diff -r a1a3b63d2af2 -r 30963674e8fd test-data/vcfgenotypes-test1.tab
--- a/test-data/vcfgenotypes-test1.tab	Mon Nov 09 12:32:49 2015 -0500
+++ b/test-data/vcfgenotypes-test1.tab	Thu Sep 15 16:05:15 2016 -0400
@@ -5,5 +5,5 @@
 20	1110696	A	G,T	A,G,T	NA00001:G/T	NA00002:T/G	NA00003:T/T	
 20	1230237	T	.	T,.	NA00001:T/T	NA00002:T/T	NA00003:T/T	
 20	1234567	G	GA,GAC	G,GA,GAC	NA00001:G/GA	NA00002:G/GAC	NA00003:GA/GA	
-20	1235237	T	.	T,.	NA00001:T/T	NA00002:T/T	
+20	1235237	T	.	T,.	NA00001:T/T	NA00002:T/T	NA00003:T/T	
 X	10	AC	A,ATG	AC,A,ATG	NA00001:AC	NA00002:AC/A	NA00003:AC/ATG	
diff -r a1a3b63d2af2 -r 30963674e8fd tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Nov 09 12:32:49 2015 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="vcflib" version="8a5602bf07">
-        <repository changeset_revision="3ac0905f7b7c" name="package_vcflib_8a5602bf07" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-</tool_dependency>
diff -r a1a3b63d2af2 -r 30963674e8fd vcfgenotypes.xml
--- a/vcfgenotypes.xml	Mon Nov 09 12:32:49 2015 -0500
+++ b/vcfgenotypes.xml	Thu Sep 15 16:05:15 2016 -0400
@@ -1,30 +1,30 @@
-<tool id="vcfgenotypes" name="VCFgenotypes:" version="0.0.3">
-  <description>Convert numerical representation of genotypes to allelic</description>
-  <macros>
-    <import>macros.xml</import>
-  </macros>
-  <expand macro="requirements"></expand>
-  <expand macro="stdio" />
-  <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command>
-  <inputs>
-    <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/>
-  </inputs>
-  <outputs>
-    <data format="tabular" name="out_file1" />
-  </outputs>
-  <tests>
-    <test>
-      <param name="vcf_input" value="vcflib.vcf"/>
-      <output name="out_file1" file="vcfgenotypes-test1.tab"/>
-    </test>
-    </tests>
-  <help>
-
-Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields.
-
-----
-
-Vcfgenotypes @IS_PART_OF_VCFLIB@
-</help>
-  <expand macro="citations" />
-</tool>
+<tool id="vcfgenotypes" name="VCFgenotypes:" version="@WRAPPER_VERSION@.0">
+  <description>Convert numerical representation of genotypes to allelic</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <expand macro="stdio" />
+  <command>vcfgenotypes "${vcf_input}" > "${out_file1}"</command>
+  <inputs>
+    <param format="vcf" name="vcf_input" type="data" label="Select VCF dataset"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="out_file1" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="vcf_input" value="vcflib.vcf"/>
+      <output name="out_file1" file="vcfgenotypes-test1.tab"/>
+    </test>
+    </tests>
+  <help>
+
+Converts numerical representation of genotypes (standard in GT field) to the alleles provided in the call's ALT/REF fields.
+
+----
+
+Vcfgenotypes @IS_PART_OF_VCFLIB@
+</help>
+  <expand macro="citations" />
+</tool>