view vcfcommonsamples.xml @ 2:976d3b4447cd draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfcommonsamples commit c2af291b241e37e0a55adbc1fc72a9fa37d93582

<tool id="vcfcommonsamples" name="VCFcommonSamples:" version="@WRAPPER_VERSION@+galaxy0">
  <description>Output records belonging to samples common between two datasets</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <expand macro="stdio" />
  <command>vcfcommonsamples "${input1}" "${input2}" > "${out_file1}"</command>
  <inputs>
    <param format="vcf" name="input1" type="data" label="First dataset"/>
    <param format="vcf" name="input2" type="data" label="Second dataset"/>
  </inputs>
  <outputs>
    <data format="vcf" name="out_file1" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="vcflib.vcf"/>
      <param name="input2" value="vcfcommonsamples-test1-input2.vcf"/>
      <output name="out_file1" file="vcfcommonsamples-test1.vcf"/>
    </test>
    </tests>
  <help>

Outputs each record in the first file, removing samples not present in the second.

----

Vcfcommonsamples @IS_PART_OF_VCFLIB@
</help>
  <expand macro="citations" />
</tool>