diff vcfcombine.xml @ 0:a9ce47a1d653 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcombine commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/vcfcombine.xml	Mon Nov 09 12:30:48 2015 -0500
@@ -0,0 +1,40 @@
+<tool id="vcfcombine" name="VCFcombine:" version="0.0.4">
+  <description>Combine multiple VCF datasets</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"></expand>
+  <expand macro="stdio" />
+  <command>
+
+   vcfcombine
+
+   #for $input_vcf in $input_vcfs:
+        "${input_vcf}"
+   #end for
+
+   > "${out_file1}"
+
+  </command>
+  <inputs>
+    <param name="input_vcfs" type="data" format="vcf" label="Select VCF Datasets" min="2" multiple="True"/>
+  </inputs>
+  <outputs>
+    <data format="vcf" name="out_file1" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input_vcfs" value="vcflib.vcf"/>
+      <output name="out_file1" file="vcfcombine-test1.vcf"/>
+    </test>
+    </tests>
+  <help>
+
+Combines VCF files positionally, combining samples when sites and alleles are identical. Any number of VCF files may be combined. The INFO field and other columns are taken from one of the files, which are combined when records in multiple files match. Alleles must have identical ordering to be combined into one record. If they do not, multiple records will be emitted.
+
+-----
+
+Vcfcombine @IS_PART_OF_VCFLIB@
+</help>
+  <expand macro="citations" />
+</tool>