# HG changeset patch
# User iuc
# Date 1579783982 0
# Node ID 492d9c83a28483d033d8489a1e771b82b38132b0
# Parent  e13203eab380926cd9f422b482c36fec85bb4d4f
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfannotate commit 36e9065027cc7bf721e9d203208477ee88906c57"

diff -r e13203eab380 -r 492d9c83a284 macros.xml
--- a/macros.xml	Mon Mar 26 12:11:28 2018 -0400
+++ b/macros.xml	Thu Jan 23 12:53:02 2020 +0000
@@ -1,7 +1,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="1.0.0_rc1">vcflib</requirement>
+            <requirement type="package" version="1.0.0_rc3">vcflib</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -10,10 +10,10 @@
             <exit_code range="1:" level="fatal" />
         </stdio>
     </xml>
-   <token name="@WRAPPER_VERSION@">1.0.0_rc1</token>
-   	<xml name="citations">
-   	     <citations>
-             <citation type="bibtex">
+   <token name="@WRAPPER_VERSION@">1.0.0_rc3</token>
+       <xml name="citations">
+           <citations>
+               <citation type="bibtex">
 @misc{Garrison2015,
   author = {Garrison, Erik},
   year = {2015},
@@ -22,8 +22,8 @@
   journal = {GitHub repository},
   url = {https://github.com/ekg/vcflib},
 }
-             </citation>
-   	     </citations>
-   	</xml>
+            </citation>
+        </citations>
+        </xml>
     <token name="@IS_PART_OF_VCFLIB@">is a part of VCFlib toolkit developed by Erik Garrison (https://github.com/ekg/vcflib).</token>
 </macros>
diff -r e13203eab380 -r 492d9c83a284 vcfannotate.xml
--- a/vcfannotate.xml	Mon Mar 26 12:11:28 2018 -0400
+++ b/vcfannotate.xml	Thu Jan 23 12:53:02 2020 +0000
@@ -5,7 +5,7 @@
   </macros>
   <expand macro="requirements"/>
   <expand macro="stdio" />
-  <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command>
+  <command>vcfannotate --key '${key_option}' -b '${bed_data}' '${input}' > '${out_file1}'</command>
   <inputs>
     <param format="vcf" name="input" type="data" label="Select VCF dataset"/>
     <param name="bed_data" type="data" format="bed" label="Select BED dataset to itersect with"/>