comparison vcfannotate.xml @ 1:a5c0a47fd35a draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfannotate commit 0b9b6512272b82637c2f1e831367e89aed77ae79

0:90b4338559cd

<tool id="vcfannotate" name="VCFannotate:" version="0.0.3">
  <description>Intersect VCF records with BED annotations</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"></expand>
  <expand macro="stdio" />
  <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command>
  <inputs>        
    <param format="vcf" name="input" type="data" label="Select VCF dataset"/>
    <param name="bed_data" type="data" format="bed" label="Select BED dataset to itersect with"/>
    <param name="key_option" type="text" value="BED-features" label="Intersecting VCF records will be prefixed with this TAG within the INFO field" help="--key option"/>
  </inputs>
  <outputs>

1:a5c0a47fd35a

<tool id="vcfannotate" name="VCFannotate:" version="@WRAPPER_VERSION@.0">
  <description>Intersect VCF records with BED annotations</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <expand macro="stdio" />
  <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command>
  <inputs>
    <param format="vcf" name="input" type="data" label="Select VCF dataset"/>
    <param name="bed_data" type="data" format="bed" label="Select BED dataset to itersect with"/>
    <param name="key_option" type="text" value="BED-features" label="Intersecting VCF records will be prefixed with this TAG within the INFO field" help="--key option"/>
  </inputs>
  <outputs>