Mercurial > repos > devteam > vcfallelicprimitives

diff vcfallelicprimitives.xml @ 3:d5ecdca44759 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfallelicprimitives commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 12:52:39 +0000
parents 3c6eefd09af1
children
line wrap: on
line diff
--- a/vcfallelicprimitives.xml	Mon Mar 26 12:11:08 2018 -0400
+++ b/vcfallelicprimitives.xml	Thu Jan 23 12:52:39 2020 +0000
@@ -7,12 +7,12 @@
     <expand macro="requirements"></expand>
     <expand macro="stdio" />
     <command>
-        cat "${input}" | vcfallelicprimitives 
+        cat '${input}' | vcfallelicprimitives
             ${m_option} 
-            -t "${t_option}"
+            -t '${t_option}'
             -L "${max_length}" 
             $keep_info 
-            $keep_geno > "${out_file1}"
+            $keep_geno > '${out_file1}'
     </command>
     <inputs>
         <param format="vcf" name="input" type="data" label="Select VCF dataset"/>