diff vcfallelicprimitives.xml @ 1:c58ebedf1159 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfallelicprimitives commit 0b9b6512272b82637c2f1e831367e89aed77ae79

--- a/vcfallelicprimitives.xml	Mon Nov 09 12:29:05 2015 -0500
+++ b/vcfallelicprimitives.xml	Thu Sep 15 16:05:20 2016 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="vcfallelicprimitives" name="VcfAllelicPrimitives:" version="0.0.3">
+<tool id="vcfallelicprimitives" name="VcfAllelicPrimitives:" version="@WRAPPER_VERSION@.0">
     <description>Split alleleic primitives (gaps or mismatches) into multiple VCF lines</description>
     <macros>
         <import>macros.xml</import>
@@ -10,7 +10,7 @@
         cat "${input}" | vcfallelicprimitives 
             ${m_option} 
             -t "${t_option}"
-	    -L "${max_length}" 
+            -L "${max_length}" 
             $keep_info 
             $keep_geno > "${out_file1}"
     </command>
@@ -18,7 +18,7 @@
         <param format="vcf" name="input" type="data" label="Select VCF dataset"/>
         <param name="m_option" type="boolean" checked="false" truevalue="--use-mnps" falsevalue="" label="Retain MNPs as separate events" help="--use-mnps option"/>
         <param name="t_option" type="text" value="Split primitives" label="Tag records which are split apart of a complex allele with this flag. " help="--tag-parsed option"/>
-	<param name="max_length" type="integer" value="200" label="Do not manipulate records in which either the ALT or REF is longer than (bp)" help="--max-length option"/>
+        <param name="max_length" type="integer" value="200" label="Do not manipulate records in which either the ALT or REF is longer than (bp)" help="--max-length option"/>
         <param name="keep_info" type="boolean" truevalue="--keep-info" falsevalue="" checked="False" 
             label="Maintain site and allele-level annotations when decomposing" 
             help="Note that in many cases, such as multisample VCFs, these won't be valid post-decomposition.  For biallelic loci in single-sample VCFs, they should be usable with caution. (--keep-info)"/>