Mercurial > repos > devteam > vcfaddinfo
changeset 1:2290bd5707fe draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
| author | devteam |
|---|---|
| date | Thu, 15 Sep 2016 16:04:52 -0400 |
| parents | 9cf4c4cfa456 |
| children | b9e24dacef7a |
| files | macros.xml tool_dependencies.xml vcfaddinfo.xml |
| diffstat | 3 files changed, 34 insertions(+), 39 deletions(-) [+] |
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--- a/macros.xml Mon Nov 09 12:28:48 2015 -0500 +++ b/macros.xml Thu Sep 15 16:04:52 2016 -0400 @@ -1,7 +1,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="8a5602bf07">vcflib</requirement> + <requirement type="package" version="1.0.0_rc1">vcflib</requirement> <yield/> </requirements> </xml> @@ -10,6 +10,7 @@ <exit_code range="1:" level="fatal" /> </stdio> </xml> + <token name="@WRAPPER_VERSION@">1.0.0_rc1</token> <xml name="citations"> <citations> <citation type="bibtex">
--- a/tool_dependencies.xml Mon Nov 09 12:28:48 2015 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="vcflib" version="8a5602bf07"> - <repository changeset_revision="3ac0905f7b7c" name="package_vcflib_8a5602bf07" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency>
--- a/vcfaddinfo.xml Mon Nov 09 12:28:48 2015 -0500 +++ b/vcfaddinfo.xml Thu Sep 15 16:04:52 2016 -0400 @@ -1,32 +1,32 @@ -<tool id="vcfaddinfo" name="VCFaddinfo:" version="0.0.3"> - <description>Adds info fields from the second dataset which are not present in the first dataset</description> - <macros> - <import>macros.xml</import> - </macros> - <expand macro="requirements"></expand> - <expand macro="stdio" /> - <command>vcfaddinfo "${input1}" "${input2}" > "${out_file1}"</command> - <inputs> - <param format="vcf" name="input1" type="data" label="Add INFO fields to" help="First VCF dataset"/> - <param format="vcf" name="input2" type="data" label="using INFO fields from" help="Second VCF dataset"/> - </inputs> - <outputs> - <data format="vcf" name="out_file1" /> - </outputs> - <tests> - <test> - <param name="input1" value="vcfaddinfo-input1.vcf"/> - <param name="input2" value="vcflib.vcf"/> - <output name="out_file1" file="vcfaddinfo-test1.vcf" /> - </test> - </tests> -<help> - -Adds info fields from the second dataset which are not present in the first dataset. - ------ - -Vcfaddinfo @IS_PART_OF_VCFLIB@ -</help> - <expand macro="citations" /> -</tool> +<tool id="vcfaddinfo" name="VCFaddinfo:" version="@WRAPPER_VERSION@.0"> + <description>Adds info fields from the second dataset which are not present in the first dataset</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"></expand> + <expand macro="stdio" /> + <command>vcfaddinfo "${input1}" "${input2}" > "${out_file1}"</command> + <inputs> + <param format="vcf" name="input1" type="data" label="Add INFO fields to" help="First VCF dataset"/> + <param format="vcf" name="input2" type="data" label="using INFO fields from" help="Second VCF dataset"/> + </inputs> + <outputs> + <data format="vcf" name="out_file1" /> + </outputs> + <tests> + <test> + <param name="input1" value="vcfaddinfo-input1.vcf"/> + <param name="input2" value="vcflib.vcf"/> + <output name="out_file1" file="vcfaddinfo-test1.vcf" /> + </test> + </tests> +<help> + +Adds info fields from the second dataset which are not present in the first dataset. + +----- + +Vcfaddinfo @IS_PART_OF_VCFLIB@ +</help> + <expand macro="citations" /> +</tool>