# HG changeset patch
# User devteam
# Date 1483272768 18000
# Node ID 8d4074c9c2d83feac9a0e53dbc5aac649eeb6207
# Parent  d1009ebd6f15b4466654d4ebcba60282a4dfacc2
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/tophat2 commit 9f1003eecdf81dc46af598617c8a1042c9d9eb8c

diff -r d1009ebd6f15 -r 8d4074c9c2d8 tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Jan 01 06:51:19 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,9 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-  <package name="bowtie2" version="2.2.5">
-      <repository changeset_revision="f5582ac5ba3c" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="tophat" version="2.1.0">
-      <repository changeset_revision="121ea973aad8" name="package_tophat_2_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-</tool_dependency>
diff -r d1009ebd6f15 -r 8d4074c9c2d8 tophat2_wrapper.xml
--- a/tophat2_wrapper.xml	Sun Jan 01 06:51:19 2017 -0500
+++ b/tophat2_wrapper.xml	Sun Jan 01 07:12:48 2017 -0500
@@ -1,5 +1,4 @@
-<tool id="tophat2" name="TopHat" version="2.1.0">
-    <!-- Wrapper compatible with Tophat version 2.0.0+ -->
+<tool id="tophat2" name="TopHat" version="2.1.1">
     <description>Gapped-read mapper for RNA-seq data</description>
     <macros>
       <import>tophat_macros.xml</import>
@@ -33,8 +32,8 @@
       </macro>
     </macros>
     <requirements>
-        <requirement type="package" version="2.2.5">bowtie2</requirement>
-        <requirement type="package" version="2.1.0">tophat</requirement>
+        <requirement type="package" version="2.2.8">bowtie2</requirement>
+        <requirement type="package" version="2.1.1">tophat</requirement>
     </requirements>
     <stdio>
         <regex match="Exception|Error" source="both" level="fatal" description="Tool execution failed"/>