# HG changeset patch
# User devteam
# Date 1401813191 14400
# Node ID 9ef9311900c9cd0b37cc8556c853e1a79496de43
# Parent  86e80ece879150d07c079fa81ff5914b49124797
Uploaded tool help images.

diff -r 86e80ece8791 -r 9ef9311900c9 t2ps_autoscale.png
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diff -r 86e80ece8791 -r 9ef9311900c9 t2ps_autoscale_tree.png
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diff -r 86e80ece8791 -r 9ef9311900c9 t2ps_heatmap.png
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diff -r 86e80ece8791 -r 9ef9311900c9 t2ps_ideal.png
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diff -r 86e80ece8791 -r 9ef9311900c9 t2ps_ideal_ssp.png
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diff -r 86e80ece8791 -r 9ef9311900c9 t2ps_missing_nodes.png
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diff -r 86e80ece8791 -r 9ef9311900c9 t2ps_node_label.png
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diff -r 86e80ece8791 -r 9ef9311900c9 t2ps_wrapper.xml
--- a/t2ps_wrapper.xml	Thu Jan 23 12:31:49 2014 -0500
+++ b/t2ps_wrapper.xml	Tue Jun 03 12:33:11 2014 -0400
@@ -62,14 +62,14 @@
 
 Drawing the tree with default parameters (without changing anything in the interface) will produce this tree:
 
-.. image:: ${static_path}/images/t2ps_ideal.png 
+.. image:: t2ps_ideal.png 
    :width: 500
 
 (for explanation of colors and numbers on the tree scroll to the bottom of this help section)
 
 Here *Class* rank represent terminal nodes (leaves) of the tree because it is the default setting of the "*show ranks from root to*" drop-down.  Changing the drop-down to "*Subspecies*" will produce this:
 
-.. image:: ${static_path}/images/t2ps_ideal_ssp.png 
+.. image:: t2ps_ideal_ssp.png 
    :width: 1000
 
 --------
@@ -87,7 +87,7 @@
 
 A full tree for this dataset will look like this:
 
-.. image:: ${static_path}/images/t2ps_missing_nodes.png 
+.. image:: t2ps_missing_nodes.png 
    :width: 1000
 
 Missing nodes are simply omitted from the tree (there are no gray boxes corresponding to "n") but the branch length is maintained so that taxa belonging to the same taxonomic rank are always aligned with each other
@@ -98,11 +98,11 @@
 
 You can use the "*maximum number of leaves*" to restrict the tree to a specified number of leaves (external nodes).  Using the following setting on the above dataset (note *show ranks from root to* set to *show entire tree* and *maximum number of leaves* is set *3*):
 
-.. image:: ${static_path}/images/t2ps_autoscale.png 
+.. image:: t2ps_autoscale.png 
 
 will produce this tree:
 
-.. image:: ${static_path}/images/t2ps_autoscale_tree.png 
+.. image:: t2ps_autoscale_tree.png 
    :width: 1000
 
 Here the tree is automatically trimmed at a taxonomic rank that will only have 3 outer nodes.  This is very useful for initial evaluation of very large trees where you want to only see, say, 1,000 outer nodes at once.
@@ -113,11 +113,11 @@
 
 Branches of the tree are colored according to the heatmap below.  The "bluer" the branch the lesser the number of leaves it leads to and vice versa. 
 
-.. image:: ${static_path}/images/t2ps_heatmap.png 
+.. image:: t2ps_heatmap.png 
 
 Each node is labeled with taxonomic name and the number of tree leaves belonging to this taxonomic group:
 
-.. image:: ${static_path}/images/t2ps_node_label.png 
+.. image:: t2ps_node_label.png