Mercurial > repos > devteam > subtract_query

annotate subtract_query.xml @ 3:f58ba0382c26 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
author devteam
date Thu, 22 Jun 2017 18:51:44 -0400
parents 8a3448727cec
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
1 <tool id="subtract_query1" name="Subtract Whole Dataset" version="0.1">
3
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
2 <description>from another dataset</description>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
3 <macros>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
4 <import>macros.xml</import>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
5 </macros>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
6 <expand macro="requirements" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
7 <command><![CDATA[
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
8 python '$__tool_directory__/subtract_query.py'
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
9 '$input1'
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
10 '$input2'
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
11 $begin_col
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
12 $end_col
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
13 '$output'
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
14 #if str($ignore_empty_end_cols) == 'true':
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
15 --ignore-empty-end-cols
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
16 #end if
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
17 ]]></command>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
18 <inputs>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
19 <param name="input2" type="data" format="txt" label="Subtract" help="Second dataset" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
20 <param name="input1" type="data" format="txt" label="from" help="First dataset" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
21 <param name="begin_col" type="data_column" data_ref="input1" force_select="False" label="Restrict subtraction between 'begin column'" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
22 <param name="end_col" type="data_column" data_ref="input1" force_select="False" label="and 'end column'" help="Specifying columns for restricting subtraction is available only for tabular formatted datasets" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
23 <param name="ignore_empty_end_cols" type="boolean" label="Ignore empty columns and whitespace at end of line when subtracting"/>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
24 </inputs>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
25 <outputs>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
26 <data name="output" format_source="input1" metadata_source="input1" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
27 </outputs>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
28 <tests>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
29 <!-- Subtract 2 non-tabular files with no column restrictions. -->
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
30 <!-- Cannot figure out why this test won't pass, it works in real time... -->
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
31 <!--
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
32 <test>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
33 <param name="input1" value="1.txt" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
34 <param name="input2" value="2.txt" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
35 <param name="begin_col" value="None" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
36 <param name="end_col" value="None" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
37 <output name="output" file="subtract-query-1.dat" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
38 </test>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
39 -->
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
40 <!-- Subtract 2 tabular files with no column restrictions. -->
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
41 <test>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
42 <param name="input1" value="eq-showbeginning.dat" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
43 <param name="input2" value="eq-showtail.dat" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
44 <param name="begin_col" value="" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
45 <param name="end_col" value="" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
46 <output name="output" file="subtract-query-2.dat" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
47 </test>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
48 <!-- Subtract 2 tabular files with column restrictions. -->
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
49 <test>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
50 <param name="input1" value="eq-showbeginning.dat" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
51 <param name="input2" value="eq-removebeginning.dat" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
52 <param name="begin_col" value="c1" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
53 <param name="end_col" value="c3" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
54 <output name="output" file="subtract-query-3.dat" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
55 </test>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
56 <!-- Subtract a non-tabular file from a tabular file with no column restrictions. -->
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
57 <test>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
58 <param name="input1" value="eq-showbeginning.dat" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
59 <param name="input2" value="2.txt" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
60 <param name="begin_col" value="" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
61 <param name="end_col" value="" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
62 <output name="output" file="subtract-query-4.dat" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
63 </test>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
64 <!-- Subtract 2 tabular files with no column restrictions, ignoring empty end columns. -->
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
65 <test>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
66 <param name="input1" value="eq-showbeginning_e.dat" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
67 <param name="input2" value="eq-showtail.dat" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
68 <param name="begin_col" value="" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
69 <param name="end_col" value="" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
70 <param name="ignore_empty_end_cols" value="true" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
71 <output name="output" file="subtract-query-2.dat" />
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
72 </test>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
73 </tests>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
74 <help><![CDATA[
0
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
75 .. class:: infomark
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
76
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
77 **TIP:** This tool complements the tool in the **Operate on Genomic Intervals** tool set which subtracts the intervals of two datasets.
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
78
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
79 -----
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
80
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
81 **Syntax**
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
82
3
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
83 This tool subtracts an entire dataset from another dataset.
0
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
84
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
85 - Any text format is valid.
3
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
86 - If both dataset formats are tabular, you may restrict the subtraction to specific columns **contained in both datasets** and the resulting dataset will include only the columns specified.
0
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
87 - The begin column must be less than or equal to the end column. If it is not, begin column is switched with end column.
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
88 - If begin column is specified but end column is not, end column will default to begin_column (and vice versa).
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
89 - All blank and comment lines are skipped and not included in the resulting dataset (comment lines are lines beginning with a # character).
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
90 - Duplicate lines are eliminated from both dataset prior to subtraction. If any duplicate lines were eliminated from the first dataset, the number is displayed in the resulting history item.
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
91
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
92 -----
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
93
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
94 **Example**
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
95
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
96 If this is the **First dataset**::
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
97
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
98 chr1 4225 19670
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
99 chr10 6 8
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
100 chr1 24417 24420
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
101 chr6_hla_hap2 0 150
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
102 chr2 1 5
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
103 chr10 2 10
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
104 chr1 30 55
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
105 chrY 1 20
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
106 chr1 1225979 42287290
3
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
107 chr10 7 8
0
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
108
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
109 and this is the **Second dataset**::
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
110
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
111 chr1 4225 19670
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
112 chr10 6 8
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
113 chr1 24417 24420
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
114 chr6_hla_hap2 0 150
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
115 chr2 1 5
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
116 chr1 30 55
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
117 chrY 1 20
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
118 chr1 1225979 42287290
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
119
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
120 Subtracting the **Second dataset** from the **First dataset** (including all columns) will yield::
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
121
3
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
122 chr10 7 8
0
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
123 chr10 2 10
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
124
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
125 Conversely, subtracting the **First dataset** from the **Second dataset** (including all columns) will result in an empty dataset.
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
126
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
127 Subtracting the **Second dataset** from the **First dataset** (restricting to columns c1 and c2) will yield::
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
128
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
129 chr10 7
8a3448727cec Imported from capsule None
devteam
parents:
diff changeset
130 chr10 2
3
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
131 ]]></help>
f58ba0382c26 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gops/subtract_query commit cae3e05d02e60f595bb8b6d77a84f030e9bd1689
devteam
parents: 0
diff changeset
132 </tool>