Mercurial > repos > devteam > substitution_rates
comparison substitution_rates.py @ 1:412a03dc24a2 draft default tip
planemo upload commit fa9a2569c9ece4b03f622d0b85b0e5376a25084c-dirty
author | devteam |
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date | Tue, 29 Sep 2015 11:08:38 -0400 |
parents | d51dd9e4b517 |
children |
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0:d51dd9e4b517 | 1:412a03dc24a2 |
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3 """ | 3 """ |
4 Estimates substitution rates from pairwise alignments using JC69 model. | 4 Estimates substitution rates from pairwise alignments using JC69 model. |
5 """ | 5 """ |
6 | 6 |
7 from galaxy import eggs | 7 from galaxy import eggs |
8 from galaxy.tools.util.galaxyops import * | 8 from galaxy.tools.util.galaxyops import parse_cols_arg |
9 from galaxy.tools.util import maf_utilities | 9 from galaxy.tools.util import maf_utilities |
10 from bx.intervals.io import NiceReaderWrapper | |
10 import bx.align.maf | 11 import bx.align.maf |
11 import fileinput | 12 import fileinput |
12 import sys | 13 import sys |
13 | 14 |
14 def stop_err(msg): | 15 def stop_err(msg): |