Mercurial > repos > devteam > snpeff_with_dep
view snpeff_with_dep-244c09911d7a/tool_dependencies.xml @ 0:d8bd4326dc3a draft
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author | devteam |
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date | Thu, 27 Sep 2012 13:40:17 -0400 |
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children | 515163fbe70f |
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<?xml version="1.0"?> <tool_dependency> <package name="snpEff" version="3.0"> <install version="1.0"> <actions> <action type="shell_command">wget http://sourceforge.net/projects/snpeff/files/snpEff_v3_0_core.zip; unzip snpEff_v3_0_core.zip; mv snpEff_3_0 snpEff</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> <action type="set_environment"> <environment_variable name="JAVA_JAR_PATH" action="prepend_to">$INSTALL_DIR/snpEff</environment_variable> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/snpEff/scripts</environment_variable> </action> </actions> </install> <readme> </readme> </package> <package name="SnpSift" version="1.7"> <install version="1.0"> <actions> <action type="shell_command">mkdir SnpSift; cd SnpSift; wget http://sourceforge.net/projects/snpeff/files/SnpSift_v1_7.jar</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> <action type="set_environment"> <environment_variable name="JAVA_JAR_PATH" action="prepend_to">$INSTALL_DIR/SnpSift</environment_variable> </action> </actions> </install> <readme> </readme> </package> </tool_dependency>