Mercurial > repos > devteam > snpeff_with_dep

diff snpeff_with_dep-244c09911d7a/tool_dependencies.xml @ 1:515163fbe70f draft

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Uploaded
author devteam
date Thu, 27 Sep 2012 14:10:46 -0400
parents d8bd4326dc3a
children
line wrap: on
line diff
--- a/snpeff_with_dep-244c09911d7a/tool_dependencies.xml	Thu Sep 27 13:40:17 2012 -0400
+++ b/snpeff_with_dep-244c09911d7a/tool_dependencies.xml	Thu Sep 27 14:10:46 2012 -0400
@@ -8,7 +8,6 @@
                     <source_directory>.</source_directory>
                     <destination_directory>$INSTALL_DIR</destination_directory>
                 </action>
-
                 <action type="set_environment">
                     <environment_variable name="JAVA_JAR_PATH" action="prepend_to">$INSTALL_DIR/snpEff</environment_variable>
                 </action>
@@ -20,21 +19,4 @@
         <readme>
         </readme>
     </package>
-    <package name="SnpSift" version="1.7">
-        <install version="1.0">
-            <actions>
-                <action type="shell_command">mkdir SnpSift; cd SnpSift; wget http://sourceforge.net/projects/snpeff/files/SnpSift_v1_7.jar</action>
-                <action type="move_directory_files">
-                    <source_directory>.</source_directory>
-                    <destination_directory>$INSTALL_DIR</destination_directory>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="JAVA_JAR_PATH" action="prepend_to">$INSTALL_DIR/SnpSift</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-        </readme>
-    </package>
-</tool_dependency>
-
+</tool_dependency>
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